View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5180_low_1 (Length: 661)

Name: NF5180_low_1
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5180_low_1
NF5180_low_1
[»] chr1 (15 HSPs)
chr1 (220-661)||(19456452-19456892)
chr1 (10-149)||(17242012-17242156)
chr1 (10-88)||(9010966-9011044)
chr1 (12-88)||(24302999-24303075)
chr1 (49-149)||(9008762-9008865)
chr1 (101-149)||(9011063-9011110)
chr1 (49-88)||(17240784-17240823)
chr1 (10-64)||(13970040-13970094)
chr1 (100-149)||(24304310-24304358)
chr1 (117-149)||(48030257-48030289)
chr1 (117-147)||(43402266-43402296)
chr1 (101-149)||(17240718-17240767)
chr1 (117-149)||(24302937-24302969)
chr1 (30-62)||(48030165-48030197)
chr1 (101-149)||(51676340-51676388)
[»] chr7 (7 HSPs)
chr7 (10-149)||(5737178-5737322)
chr7 (420-478)||(10197896-10197954)
chr7 (49-149)||(5769254-5769359)
chr7 (101-149)||(23525582-23525631)
chr7 (10-88)||(12629337-12629416)
chr7 (103-149)||(6591270-6591316)
chr7 (505-550)||(10197852-10197898)
[»] chr8 (9 HSPs)
chr8 (12-83)||(40463515-40463586)
chr8 (10-88)||(9310831-9310909)
chr8 (101-149)||(38973754-38973802)
chr8 (101-149)||(39004852-39004900)
chr8 (117-149)||(14099746-14099778)
chr8 (101-149)||(42480899-42480947)
chr8 (118-149)||(3917797-3917828)
chr8 (10-64)||(38973842-38973897)
chr8 (10-64)||(39004940-39004995)
[»] scaffold0262 (1 HSPs)
scaffold0262 (12-83)||(4293-4364)
[»] chr3 (8 HSPs)
chr3 (12-83)||(11150344-11150415)
chr3 (101-153)||(42277228-42277280)
chr3 (28-88)||(51832437-51832497)
chr3 (10-63)||(52043333-52043386)
chr3 (10-64)||(39605670-39605725)
chr3 (101-151)||(39605582-39605631)
chr3 (10-64)||(54672720-54672774)
chr3 (101-149)||(15438471-15438520)
[»] chr4 (7 HSPs)
chr4 (12-88)||(47862000-47862076)
chr4 (101-151)||(56083353-56083403)
chr4 (49-88)||(44355359-44355398)
chr4 (10-64)||(47378639-47378693)
chr4 (117-147)||(47861936-47861966)
chr4 (10-63)||(52706704-52706757)
chr4 (117-149)||(12861413-12861445)
[»] scaffold0268 (2 HSPs)
scaffold0268 (420-478)||(22135-22193)
scaffold0268 (505-550)||(22191-22237)
[»] scaffold0049 (1 HSPs)
scaffold0049 (117-149)||(3943-3975)
[»] scaffold0484 (1 HSPs)
scaffold0484 (118-149)||(11537-11568)
[»] chr6 (4 HSPs)
chr6 (118-149)||(12603938-12603969)
chr6 (118-149)||(25483421-25483452)
chr6 (101-149)||(6624254-6624301)
chr6 (120-148)||(26545892-26545920)
[»] chr5 (3 HSPs)
chr5 (118-149)||(29875948-29875979)
chr5 (101-149)||(12316349-12316397)
chr5 (117-149)||(27491295-27491327)
[»] chr2 (1 HSPs)
chr2 (102-149)||(29042337-29042384)
[»] scaffold0071 (1 HSPs)
scaffold0071 (101-149)||(23671-23720)
[»] scaffold0197 (1 HSPs)
scaffold0197 (117-149)||(28784-28816)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 220 - 661
Target Start/End: Original strand, 19456452 - 19456892
Alignment:
Q  220 acactcattccaatttcaaaagtcaattaaacactaccacgtcacaaattttaccaccgatcaaaaaacccaaaattttcaaacttattccaaaaatccc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||    
T  19456452 acactcattccaatttcaaaagtcaattaaacactaccacgtcacaaattttaccaccgatcaaaaaaccccaaattttcaaactaat-ccaaaaatccc 19456550  T
Q  320 aacgcaccatttcatccttatccctgatttttccctcctcaaaaccccaaaataccgttttccccacatttttctctccccaaactaccctccaccagat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456551 aacgcaccatttcatccttatccctgatttttccctcctcaaaaccccaaaataccgttttccccacatttttctctccccaaactaccctccaccagat 19456650  T
Q  420 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaatttccttcttctcccgcacactttttcaaatccaaaa-cac 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| | |    
T  19456651 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccgcgtagtttccaatttccttcttctcccgcacgcttttccaaatccaaaacccc 19456750  T
Q  519 cccaaaattttcaaattcacccgctcctatttccactcagaaatcattatttaaacccttcaccccttcattcttactcacaacacttcaacctatcaga 618  Q
    |||||||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  19456751 cccaaaatttacaaattctcccgctcctatttccactaaaaaatcattatttaaacccttcacctcttcattcttactcacaacacttcaacctatcaaa 19456850  T
Q  619 ataatcacnnnnnnnctttcaatttcaatttcccaaaccaaac 661  Q
    ||||||||       ||||||||||||||||||||||||||||    
T  19456851 ataatcac-ttttttctttcaatttcaatttcccaaaccaaac 19456892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 17242012 - 17242156
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggta 105  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   |||||    
T  17242012 acatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggta 17242111  T
Q  106 taccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 149  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  17242112 taccaaaaagcccccaaatggcaggggggtaaaagcctattaacc 17242156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 9010966 - 9011044
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9010966 acatcatcacattaatccagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaaggggaaatctacaag 9011044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 24303075 - 24302999
Alignment:
Q  12 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    ||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||    
T  24303075 atcatcacattaatccattcagatggcttgagggtgtaaatcaaagaatcttctaattgcaagggggaatctccaag 24302999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 9008865 - 9008762
Alignment:
Q  49 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg--tataccaaaaagtccccaaatggcagggggtaaaagcctatt 145  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||  ||||||||||   |||||||||||||||||||||||||||||    
T  9008865 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacagggggtataccaaaagacccccaaatggcagggggtaaaagcctatt 9008766  T
Q  146 aacc 149  Q
    ||||    
T  9008765 aacc 9008762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 9011063 - 9011110
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9011063 gggtataccaaaaag-ccccaaatggcagggggtaaaaacctattaacc 9011110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 17240823 - 17240784
Alignment:
Q  49 aaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  17240823 aaaccaaagaatcttctaatggcaagggggaatctacaag 17240784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 13970094 - 13970040
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 64  Q
    |||||||| |||||||| ||||| |||| |||||||| |||||||||||||||||    
T  13970094 acatcatctcattaatccagtcatatggtttgggggtataaaccaaagaatcttc 13970040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 24304310 - 24304358
Alignment:
Q  100 agggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  24304310 agggtaaaccaaaaa-tccccaaatggcagggggtaaaaacctattaacc 24304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 48030257 - 48030289
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||||||||||||||||||||||||||||    
T  48030257 ccccaaatggcagggggtaaaagcctattaacc 48030289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 43402296 - 43402266
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaa 147  Q
    |||||||||||||||||||||||||||||||    
T  43402296 ccccaaatggcagggggtaaaagcctattaa 43402266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 17240767 - 17240718
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 149  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||||    
T  17240767 gggtataccaaaagacccccaaatggcaggggggtaaaagcctattaacc 17240718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 24302969 - 24302937
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||||||||||||||||| ||||||||||    
T  24302969 ccccaaatggcagggggtaaaatcctattaacc 24302937  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 48030165 - 48030197
Alignment:
Q  30 tcagatggcttgggggtgtaaaccaaagaatct 62  Q
    ||||||||| |||||||||||||||||||||||    
T  48030165 tcagatggcctgggggtgtaaaccaaagaatct 48030197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 51676340 - 51676388
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||||||||   |||||||| |||||||||||||| |||||||||    
T  51676340 gggtataccaaaagacccccaaatagcagggggtaaaagtctattaacc 51676388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 5737322 - 5737178
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggta 105  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   |||||    
T  5737322 acatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggta 5737223  T
Q  106 taccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 149  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  5737222 taccaaaaagcccccaaatggcaggggggtaaaagcctattaacc 5737178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 420 - 478
Target Start/End: Complemental strand, 10197954 - 10197896
Alignment:
Q  420 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaa 478  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  10197954 aaatcttctcatcaaagcttccccaatttcctttcaaaattcacccgcgtactttccaa 10197896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 5769254 - 5769359
Alignment:
Q  49 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg---tataccaaaaagtccccaaatggca-gggggtaaaagccta 143  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||   ||||||||||   |||||||||||| |||||||||||||||    
T  5769254 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtataccaaaagacccccaaatggcaggggggtaaaagccta 5769353  T
Q  144 ttaacc 149  Q
    ||||||    
T  5769354 ttaacc 5769359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 23525631 - 23525582
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcag-ggggtaaaagcctattaacc 149  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  23525631 gggtataccaaaaatcccccaaatggcagcggggtaaaagcctattaacc 23525582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 12629337 - 12629416
Alignment:
Q  10 acatcatcacattaatctagtcagatggct-tgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    |||||||| |||| ||| |||||||||||  | |||| ||||||||||||||||  |||||| |||||||||||| ||||    
T  12629337 acatcatcccatttatccagtcagatggcgctaggggggtaaaccaaagaatctaataatggcaagggggaatcttcaag 12629416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 6591316 - 6591270
Alignment:
Q  103 gtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||||||   | |||||||||||||||||||||||||||||||    
T  6591316 gtataccaaaataccaccaaatggcagggggtaaaagcctattaacc 6591270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 550
Target Start/End: Complemental strand, 10197898 - 10197852
Alignment:
Q  505 caaatccaaaacaccccaaaat-tttcaaattcacccgctcctattt 550  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  10197898 caaatccaaaaccccccaaaaaatttcaaattcacccgctcctattt 10197852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 40463515 - 40463586
Alignment:
Q  12 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 83  Q
    ||||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40463515 atcatcatattaatccaatcagatggcttgggggtgtaaatcaaagaatcttctaatggtaagggggaatct 40463586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 9310831 - 9310909
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    |||||||| |||||||| | ||| || |||||||||||| ||||| |||||||||| |||| |||||||||||| ||||    
T  9310831 acatcatctcattaatccattcatatagcttgggggtgtgaaccagagaatcttctcatggcaagggggaatctccaag 9310909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 38973802 - 38973754
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  38973802 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 38973754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 39004900 - 39004852
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  39004900 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 39004852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 14099778 - 14099746
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||||||||||||||||||||||||||||    
T  14099778 ccccaaatggcagggggtaaaagcctattaacc 14099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 42480947 - 42480899
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  42480947 gggtaaaccaaaaaacccctaaatggcagggggtaaaagcctattaacc 42480899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 3917828 - 3917797
Alignment:
Q  118 cccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||||||||||||||||||||    
T  3917828 cccaaatggcagggggtaaaagcctattaacc 3917797  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 38973897 - 38973842
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 64  Q
    ||||||||  ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  38973897 acatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 38973842  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 39004995 - 39004940
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 64  Q
    ||||||||  ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  39004995 acatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 39004940  T

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Target: scaffold0262 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 4293 - 4364
Alignment:
Q  12 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 83  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  4293 atcatcatattaatccaatcagatggcttgggggtgtaaaccaaataatcttctaatggcaagagggaatct 4364  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 11150415 - 11150344
Alignment:
Q  12 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 83  Q
    ||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||    
T  11150415 atcatcacattaatccaatcagatgacttgggggtgtaaaccaaggaatcttctaatggcaaggggggatct 11150344  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 42277280 - 42277228
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccataa 153  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  42277280 gggtataccaaaaaaaacccaaatggcagggggtaaaagcctattaaccataa 42277228  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 51832437 - 51832497
Alignment:
Q  28 agtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||  ||||| |||||||||||    
T  51832437 agtcatatggcttgggggtgttaactaaagaatcttctaatgacaagggagaatctacaag 51832497  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 52043333 - 52043386
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 63  Q
    |||||||| |||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  52043333 acatcatctcattgatccagtcagatgacttgggggtgtaaaccaaataatctt 52043386  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 39605725 - 39605670
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 64  Q
    |||||||| |||||||| ||||| |||| ||||||| |||||||||||||||||||    
T  39605725 acatcatcccattaatccagtcatatggtttggggggtgtaaaccaaagaatcttc 39605670  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 39605631 - 39605582
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 151  Q
    ||||| ||||||||  |||||||||||||||| ||||||||||||||||||    
T  39605631 gggtacaccaaaaaacccccaaatggcagggg-taaaagcctattaaccat 39605582  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 54672774 - 54672720
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 64  Q
    |||||||| |||||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  54672774 acatcatcccattaatccagtcatatggtttgagggtgtaaatcaaagaatcttc 54672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 15438520 - 15438471
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 149  Q
    ||||||||||||||  || |||||||||||||| ||||||||||||||||    
T  15438520 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 15438471  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 47862076 - 47862000
Alignment:
Q  12 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    |||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||| |||| ||||    
T  47862076 atcaccacattaatccaatcagatggtttggaggtgtaaaccaaagaatcttctaatggcaaggggggatctccaag 47862000  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 56083403 - 56083353
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 151  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||    
T  56083403 gggtataccaaaagacccccaaatggcagggggtaaaagcctattaaccat 56083353  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 44355359 - 44355398
Alignment:
Q  49 aaaccaaagaatcttctaatggtaagggggaatctacaag 88  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  44355359 aaaccaaagaatcttctaatagcaagggggaatctacaag 44355398  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 47378639 - 47378693
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 64  Q
    |||||||| |||||||| ||||| || |||||||||| | |||||||||||||||    
T  47378639 acatcatctcattaatccagtcatatagcttgggggtatgaaccaaagaatcttc 47378693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 47861966 - 47861936
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaa 147  Q
    |||||||||||||||||||||||||||||||    
T  47861966 ccccaaatggcagggggtaaaagcctattaa 47861936  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 52706704 - 52706757
Alignment:
Q  10 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 63  Q
    |||||||  |||| ||| ||||||||||||||| ||||||||||||| ||||||    
T  52706704 acatcatttcattgatccagtcagatggcttggaggtgtaaaccaaataatctt 52706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 12861445 - 12861413
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||| ||||||||||||||||||||||||    
T  12861445 ccccaaatagcagggggtaaaagcctattaacc 12861413  T

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Target: scaffold0268 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 22135 - 22193
Alignment:
Q  420 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaa 478  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  22135 aaatcttctcatcaaagcttccccaatttcctttcaaaattcacccgcgtactttccaa 22193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 22191 - 22237
Alignment:
Q  505 caaatccaaaacaccccaaaat-tttcaaattcacccgctcctattt 550  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  22191 caaatccaaaaccccccaaaaaatttcaaattcacccgctcctattt 22237  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 3943 - 3975
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||||||||||||||||||||||||||||    
T  3943 ccccaaatggcagggggtaaaagcctattaacc 3975  T

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Target: scaffold0484 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 11568 - 11537
Alignment:
Q  118 cccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||||||||||||||||||||    
T  11568 cccaaatggcagggggtaaaagcctattaacc 11537  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 12603969 - 12603938
Alignment:
Q  118 cccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||||||||||||||||||||    
T  12603969 cccaaatggcagggggtaaaagcctattaacc 12603938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 149
Target Start/End: Original strand, 25483421 - 25483452
Alignment:
Q  118 cccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||||||||||||||||||||    
T  25483421 cccaaatggcagggggtaaaagcctattaacc 25483452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 6624301 - 6624254
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  6624301 gggtataccaaaa-gaccccaaatggcaaggggtaaaaacctattaacc 6624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 26545892 - 26545920
Alignment:
Q  120 caaatggcagggggtaaaagcctattaac 148  Q
    |||||||||||||||||||||||||||||    
T  26545892 caaatggcagggggtaaaagcctattaac 26545920  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 29875979 - 29875948
Alignment:
Q  118 cccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||||||||||||||||||||    
T  29875979 cccaaatggcagggggtaaaagcctattaacc 29875948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 12316397 - 12316349
Alignment:
Q  101 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||||||||   | ||||||||||||| |||||||||||||||||    
T  12316397 gggtataccaaaagacctccaaatggcagggagtaaaagcctattaacc 12316349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 27491295 - 27491327
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaacc 149  Q
    |||||||| ||||||||||||||||||||||||    
T  27491295 ccccaaattgcagggggtaaaagcctattaacc 27491327  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 29042384 - 29042337
Alignment:
Q  102 ggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||    
T  29042384 ggtataccaaaagacccccaaatagcagggggtaaaagcctattaacc 29042337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 23671 - 23720
Alignment:
Q  101 gggtataccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 149  Q
    ||||||||||||||  || ||||||||| |||||||||||||||||||||    
T  23671 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 23720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 28816 - 28784
Alignment:
Q  117 ccccaaatggcagggggtaaaagcctattaacc 149  Q
    ||||||||||||||||||||||||| |||||||    
T  28816 ccccaaatggcagggggtaaaagccaattaacc 28784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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