View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5180_low_3 (Length: 375)
Name: NF5180_low_3
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 6452196 - 6451850
Alignment:
| Q |
19 |
acgattatgatgtttataatgatctcggaaatcctgatggtggcgacgcccttgttcgtccaatccttggaggatctagcacccatccctaccctcgtag |
118 |
Q |
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| T |
6452196 |
acgattatgatgtttataatgatctcggaaatcctgatggtggcgacgcccttgttcgtccaatccttggaggatctagcacccatccctaccctcgtag |
6452097 |
T |
|
| Q |
119 |
ggttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaacggttagtaaatttaacgtgtctattttatatgaacgttctaattgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6452096 |
ggttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaacggttagtaaatttaacatgtctattttatatgaacgttctaattgg |
6451997 |
T |
|
| Q |
219 |
ttttatgttatatgattcttaacagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451996 |
ttttatgttatatgattcttaacagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagact |
6451897 |
T |
|
| Q |
319 |
ttcttatgtatggaataaagtcattgtcacaagacgttttgcctttg |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451896 |
ttcttatgtatggaataaagtcattgtcacaagacgttttgcctttg |
6451850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 6458287 - 6457959
Alignment:
| Q |
21 |
gattatgatgtttataatgatctcggaaatcctgatggtggcgacgcccttgttcgtccaatccttggaggatctagcacccatccctaccctcgtaggg |
120 |
Q |
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| T |
6458287 |
gattatgatatttataatgatttgggaaatccagatggtggtgacgcacttgtccgtcctgtccttgggggatcaagcacctatccctaccctcgcaggg |
6458188 |
T |
|
| Q |
121 |
ttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaa--cggttagtaaatttaacgtgtctattttatatgaacgttctaattgg |
218 |
Q |
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|||||| ||||||||||||||| |||||||||| ||| || || || || ||||||| ||||||| |||| ||||| || |||||||||||||| |
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| T |
6458187 |
ttagaagtggtagaaaaccaaccagaaaaggttagtttgctgccgaaatatagcggttagcgaatttaatgtgttcattttgtagaaacgttctaattgg |
6458088 |
T |
|
| Q |
219 |
ttttatg-ttatatgattcttaacagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagac |
317 |
Q |
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||||||| || | | |||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6458087 |
ttttatgctttttttattcgtaacagatcctaagagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagac |
6457988 |
T |
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| Q |
318 |
tttcttatgtatggaataaagtcattgtc |
346 |
Q |
| |
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|| ||||||||||||||||| ||| |||| |
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| T |
6457987 |
ttccttatgtatggaataaaatcactgtc |
6457959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 7460225 - 7460172
Alignment:
| Q |
270 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
323 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
7460225 |
atttacgttccaagagatgaatcatttggtcacttgaagtcatctgactttctt |
7460172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 7471801 - 7471748
Alignment:
| Q |
270 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
323 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
7471801 |
atttacgttccaagagatgaatcatttggtcacttgaagtcatctgactttctt |
7471748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 6275484 - 6275431
Alignment:
| Q |
270 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
323 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
6275484 |
atttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttctt |
6275431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 6322350 - 6322298
Alignment:
| Q |
271 |
tttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
323 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
6322350 |
tttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttctt |
6322298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 365
Target Start/End: Original strand, 9603361 - 9603486
Alignment:
| Q |
240 |
acagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagt |
339 |
Q |
| |
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||||||| ||| ||||||| ||| |||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| | |
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| T |
9603361 |
acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaat |
9603460 |
T |
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| Q |
340 |
cattgtcacaagacgttttgcctttg |
365 |
Q |
| |
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||||||| ||||| || || |||||| |
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| T |
9603461 |
cattgtctcaagatgtgttacctttg |
9603486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 9603196 - 9603271
Alignment:
| Q |
69 |
cttgttcgtccaatccttggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaacta |
144 |
Q |
| |
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|||| |||||| |||||||||| |||||||| ||||| |||||||| |||||||||| |||| |||||||||||| |
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| T |
9603196 |
cttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaacta |
9603271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 9589103 - 9589146
Alignment:
| Q |
281 |
aagagatgaaaattttggtcacttgaagtcatcagactttctta |
324 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
9589103 |
aagagatgaaaattttggtcacttaaagtcatcagacttcctta |
9589146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 42687709 - 42687773
Alignment:
| Q |
273 |
tatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaa |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
42687709 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaa |
42687773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 42694120 - 42694073
Alignment:
| Q |
277 |
ttccaagagatgaaaattttggtcacttgaagtcatcagactttctta |
324 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
42694120 |
ttccaagagatgaagcttttggtcacttgaaatcatcagattttctta |
42694073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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