View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5180_low_4 (Length: 372)
Name: NF5180_low_4
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 65 - 359
Target Start/End: Complemental strand, 8354317 - 8354023
Alignment:
| Q |
65 |
atactattggcaattaattaataaatcaaatacacatgggttacctgcaattgctctggattagtgctgattatgaaatcatcagctcccaaacgttcct |
164 |
Q |
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| T |
8354317 |
atactattggcaattaattaataaatcaaatacacatgggttacctgcaattggtctggattagtgctgattatgaaatcatcagctcccaaacgttcct |
8354218 |
T |
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| Q |
165 |
tagcctcagcttgtttggaaggagaagtacttatgacagtaacatggtgaccaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaacc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354217 |
tagcctcagcttgtttggaaggagaagtacttatgacagtaacatggtgaccaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaacc |
8354118 |
T |
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| Q |
265 |
aacaacaccaattcttttccctgccgttgataccaaaccgtggtccttcaagggactgaatactgttattccagcacagagtagaggtgctgctg |
359 |
Q |
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| T |
8354117 |
aacaacaccaattcttttccctgccgttgataccaaaccgtggtccttcaagggactgaatactgttattccagcacagagtagaggtgctgctg |
8354023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 13389379 - 13389320
Alignment:
| Q |
214 |
accaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaaccaacaacacc |
273 |
Q |
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| T |
13389379 |
accaaatgctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacc |
13389320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 13446919 - 13446975
Alignment:
| Q |
214 |
accaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaaccaacaac |
270 |
Q |
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| T |
13446919 |
accaaaagctttagcaaatttcacagccatatgaccaagtccaccaagaccaacaac |
13446975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 47601191 - 47601249
Alignment:
| Q |
215 |
ccaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaaccaacaacacc |
273 |
Q |
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||||| |||||| |||| || |||||||||||||||||||| || | |||||||||||| |
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| T |
47601191 |
ccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacc |
47601249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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