View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5180_low_8 (Length: 237)
Name: NF5180_low_8
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 54217128 - 54216922
Alignment:
| Q |
16 |
cattctgaacatgtaaagcaaatgatcaaattataagaaatcattctaatattcattgaaaaagactgttttaaatagaagaagaatcaaatacctgaaa |
115 |
Q |
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| T |
54217128 |
cattctgaacatgtaaagcaaatgatcaaattataagaaatcattctaatattcattgaaaaagactgttttaaatagaagaagaatcaaatacctgaaa |
54217029 |
T |
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| Q |
116 |
gaggacataatggaggagataaagaactagttgaggccattcaaaccaaaaatacttgtcagagacttgtacaagaggtatcccctgcactactgcatgt |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54217028 |
gaggacataatggaggagataaagaactaattgaggccattcaaaccaaaaatacttgtcagagacttgtacaagaggtatcccctgcactactgcatgt |
54216929 |
T |
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| Q |
216 |
ctttctt |
222 |
Q |
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||||||| |
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| T |
54216928 |
ctttctt |
54216922 |
T |
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