View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5180_low_9 (Length: 218)
Name: NF5180_low_9
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180_low_9 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 8860596 - 8860384
Alignment:
| Q |
6 |
acaaagatggagaaaccagcatttgggaagcttaaatgtaatgttgatgcgtcattctcaacatccatcaatagagtagggataagtatgtgtattcgag |
105 |
Q |
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| T |
8860596 |
acaaagatggagaaaccagcatttgggaagcttaaatgtaatgttgatgtgtcattctcaacatccatcaatagagtagggataagtatgtgtattcgag |
8860497 |
T |
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| Q |
106 |
attgttcggnnnnnnnngtatgtgtattcgagatgtggaagggtgttatgtgttgtctaaaactctatggcttacacttttatgctacgtggaagttggc |
205 |
Q |
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| T |
8860496 |
attgttcgaaaaaaaaagtatgtgtattcgagatgtggaagggtgttatgtgttgtctaaaactctatggcttacacttttatgctacgtggaagttggc |
8860397 |
T |
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| Q |
206 |
gaagctttggggt |
218 |
Q |
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| T |
8860396 |
gaagctttggggt |
8860384 |
T |
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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 5299218 - 5299123
Alignment:
| Q |
123 |
gtatgtgtattcgagatgtggaagggtgttatgtgttgtctaaaactctatggcttacacttttatgctacgtggaagttggcgaagctttggggt |
218 |
Q |
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| T |
5299218 |
gtatgtgtatttgagatgaggaagggtgttatgtgctgtctaaaattctatggattacacccttatgctcggtggaagttggcgaagctttggggt |
5299123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 5299290 - 5299202
Alignment:
| Q |
19 |
aaccagcatttgggaagcttaaatgtaatgttgatgcgtcattctcaacatccatcaatagagtagggataagtatgtgtattcgagat |
107 |
Q |
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| T |
5299290 |
aaccagcaatggggaggctaaaatgtaatattgatgcgtcattctcaacatccctcgatagagtagggataggtatgtgtatttgagat |
5299202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 34274119 - 34274211
Alignment:
| Q |
124 |
tatgtgtattcgagatgtggaagggtgttatgtgttgtctaaaactctatggcttacacttttatgctacgtggaagttggcgaagctttggg |
216 |
Q |
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| T |
34274119 |
tatgtgtattcgagatgaggaagaatggtatgtgctgtccaaaactctacggattactcccttatgttctgtgaaagttggcgaagctttggg |
34274211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 34274066 - 34274134
Alignment:
| Q |
39 |
aaatgtaatgttgatgcgtcattctcaacatccatcaatagagtagggataagtatgtgtattcgagat |
107 |
Q |
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| T |
34274066 |
aaatgttatgttgatgattccttctcaacatcccgcaatagagctgggatagatatgtgtattcgagat |
34274134 |
T |
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