View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5181-Insertion-1 (Length: 1220)

Name: NF5181-Insertion-1
Description: NF5181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5181-Insertion-1
NF5181-Insertion-1
[»] chr1 (8 HSPs)
chr1 (12-854)||(4963743-4964590)
chr1 (9-353)||(4150161-4150498)
chr1 (8-362)||(10597717-10598069)
chr1 (888-923)||(4964627-4964662)
chr1 (996-1108)||(4964742-4964857)
chr1 (330-368)||(39393375-39393413)
chr1 (330-367)||(1547280-1547317)
chr1 (330-367)||(37619042-37619079)
[»] chr8 (3 HSPs)
chr8 (8-181)||(6446367-6446541)
chr8 (202-353)||(6446566-6446717)
chr8 (330-368)||(39099266-39099304)
[»] chr2 (4 HSPs)
chr2 (330-366)||(31570903-31570939)
chr2 (330-364)||(31861895-31861929)
chr2 (330-367)||(2325539-2325576)
chr2 (336-365)||(19073356-19073385)
[»] chr5 (4 HSPs)
chr5 (336-367)||(22974229-22974260)
chr5 (330-364)||(15724490-15724524)
chr5 (330-367)||(8742028-8742065)
chr5 (330-367)||(19119856-19119893)
[»] chr3 (2 HSPs)
chr3 (330-365)||(7327634-7327669)
chr3 (330-367)||(53175711-53175748)
[»] chr6 (2 HSPs)
chr6 (330-364)||(7235184-7235218)
chr6 (330-367)||(4318973-4319010)
[»] chr4 (1 HSPs)
chr4 (130-176)||(51169948-51169994)


Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 12 - 854
Target Start/End: Original strand, 4963743 - 4964590
Alignment:
Q  12 caacgtgttgctgctgttgggatcttgtcaataggcaagagttttagcttatgtggtgtgtgtttggggttaagatgtcggcttatatatggaacctttg 111  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||||| | |||||||||||||||||    
T  4963743 caacgtgttgctgctgttgggatcttgtcagtaggcaagagttttatcttctgtggtgtgtgtctggggttaagatgtcgtcctatatatggaacctttg 4963842  T
Q  112 taattttccttacaattttgcagcttgtgcgtcttgtacggatttgctttcaataaaatttgctaattcagnnnnnnnnnnnnnnnnnnn-gattcagga 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                     |||||||||    
T  4963843 taattttccttacaattttgcagcttgtgcgtcttgtacgggtttgctttcaataaaatttgctaattcaaaaaaataaaaaaaagtaaaagattcagga 4963942  T
Q  211 taaggattatgtttgtgttagatttatcatattttcactgaattgtgtatattcgactacttacttgcattcgaaaatacagaaaaatcaaatgacatta 310  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||    
T  4963943 taaggattatgtttgtgttagatttatcat-ttttcactgaattgtgtaaattcgactgcttacttgcattcgaaaatacacaaaaattaaatgacatta 4964041  T
Q  311 aatttgaggtcgaaattttaaagtaattctcataacttcaccatagaattttcctttatt----aacattcataaagaatatggttactttaatctacac 406  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||    
T  4964042 aatttaaggtcgaaattttgaagtaattctcataacttcaccatagaattttcctttatttattaacattcataaagaatatggttacttttatctacac 4964141  T
Q  407 tagttaagaaagtataaagcctggcgatgtatcactagttaagaactatatactcgtttgtgtcnnnnnnnnttgtatagatatttgtatattactcaaa 506  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  4964142 tagttaagaaaatataaagcctggcgatgtatcactagttaagaactatatactcgtttgtgtcaaaaaaaattgtatagatatttgtatattactcaaa 4964241  T
Q  507 acacgacaggaatattctagggtagttttcttagttaaggacattctataggtaaagggacagttatgtttttgttgacagtcgatccctttggacaatt 606  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4964242 acacgacaagaatattctagggtagttttcttagttaaggacattctataggtaaagggacagttatgtttttgttgacagtcggtccctttggacaatt 4964341  T
Q  607 tatagcataatat--taaagtgtcaggtgagtggaggataacatgcacttctttctattgctgttttaggaaaatatatttgaaccgttatttatttaat 704  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4964342 tatagcataatatattaaagtgtcag-tgagtggaggataacatgcacttctttctattgctgttttaggaaaatatatttgaactgttatttatttaat 4964440  T
Q  705 ggaaaaataaacacagagagaatttagcaaccatgtcttttagcatgccaaagtagtttgcatgtgctgcaagtaaattttaatgaagaaaagcgttctg 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4964441 ggaaaaataaacacagagagaatttagcaaccatgtcttttagcatgccaaagtagtttgcatgtgctgcaagtaaattttaatgaagaaaagtgttctg 4964540  T
Q  805 ttatttggatgtctctactttctcatttatcaattgtgttattatttgtc 854  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4964541 ttatttggatgtctctactttctcatttatcaattgtgttcttatttgtc 4964590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 4150161 - 4150498
Alignment:
Q  9 cagcaacgtgttgctgctgttgggatcttgtcaataggcaagagttttagcttatgtggtgtgtgtttggggttaagatgtcggcttatatatggaacct 108  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| |||||    
T  4150161 cagcaacgtgttgctgttgttgggatcttgtcagtaggcaagagttttagcttcagtggtgtgtgtctggggttaagatgtcggcttatatatgaaacct 4150260  T
Q  109 ttgtaattttccttacaattttgcagcttgtgcgtcttgtacggatttgc-tttcaataaaatttgctaattcagnnnnnnnnnnnnnnnnnnngattca 207  Q
    |||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||                    |||| |    
T  4150261 ttgtaattttccttaggattttgcagcttgtgcgtcttgtacgggtttgcttttcaataaaatttgctaattca--------aaaaaaataaaggattta 4150352  T
Q  208 ggataaggattatgtttgtgttagatttatcatattttcactgaattgtgtatattcgactacttacttgcattcgaaaatacagaaaaatcaaatgaca 307  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||||    
T  4150353 ggataaggattatgtttgtgttagatttatcatattttcactaaattgtgtatattcgactacttattcgcattcgaaaatacacaaatatcaaatgaca 4150452  T
Q  308 ttaaatttgaggtcgaaattttaaagtaattctcataacttcacca 353  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  4150453 ttaaatttgaggtcgaaattttgaagtaattctcatgacttcacca 4150498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 10598069 - 10597717
Alignment:
Q  8 ccagcaacgtgttgctgctgttgggatcttgtcaataggcaagagttttagcttatgtggtgtgtgtttggggttaagatgtcggcttatatatggaacc 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  10598069 ccagcaacgtgttgctgctgttgggatcttgtcagtaggcaagagttttagcttctgtagtgtgtgtttggggttaagatgtcggcttatatatggaacc 10597970  T
Q  108 tttgtaattttccttacaattttgcagcttgtgcgtcttgtacggatttgc-tttcaataaaatttgctaattcagnnnnnnnnnnnnnnnnnnngattc 206  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||                    |||||    
T  10597969 tttgtaattttc--tacgattttgcagcttgtgcgtcttgtacgggtttgcttttcaataaaatttgctaattca-aaaaaatagaaaaatgaaggattc 10597873  T
Q  207 aggataaggattatgtttgtgttagatttatcatattttcactgaattgtgtatattcgactacttacttgcattcgaaaatacagaaaaatcaaatgac 306  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||    
T  10597872 aggataaggattatgtttgtgttagctttatcatattttcattgaattgtgtatattcgactacttattcgcattcgaaaatatacaaaaatcaaatgac 10597773  T
Q  307 attaaatttgaggtcgaaattttaaagtaattctcataacttcaccatagaatttt 362  Q
    ||||||||| |  ||||||||||||| |||||||||| |||||| |||| ||||||    
T  10597772 attaaatttaaaatcgaaattttaaaataattctcatgacttcatcataaaatttt 10597717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 888 - 923
Target Start/End: Original strand, 4964627 - 4964662
Alignment:
Q  888 tgtttagaaggctaagaaagtttcggggacgacata 923  Q
    ||||||||||||||||||||||||||||||||||||    
T  4964627 tgtttagaaggctaagaaagtttcggggacgacata 4964662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 996 - 1108
Target Start/End: Original strand, 4964742 - 4964857
Alignment:
Q  996 attccggatctttcatatattatacattatccctatca-tttgaatgaatattttannnnnnnn-atcaaataa-taaatagtagctggtcgtcggtgta 1092  Q
    ||||| |||||| ||||||||||||||| ||| ||||| |||||||||||||||||         |  |||||| |||||||||||| |||||| |||||    
T  4964742 attccagatcttgcatatattatacattgtccatatcaatttgaatgaatattttatttttttataaaaaataaataaatagtagcttgtcgtccgtgta 4964841  T
Q  1093 tcccgctagctagtta 1108  Q
    ||||||||||||||||    
T  4964842 tcccgctagctagtta 4964857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 39393413 - 39393375
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttta 368  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  39393413 aaagtcattctcataacttcaccgtagaattttccttta 39393375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 1547317 - 1547280
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttt 367  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  1547317 aaagtcattctcatgacttcaccatagaattttccttt 1547280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 37619042 - 37619079
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttt 367  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  37619042 aaagtcattcttataacttcaccatagaattttccttt 37619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 6446367 - 6446541
Alignment:
Q  8 ccagcaacgtgttgctgctgttgggatcttgtcaataggcaagagttttagcttatgtggtgtgtgtttggggttaagatgtcggcttatatatggaacc 107  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  6446367 ccagcaacatgttgctgttgttgggatcttgtcagtaggcaagagttttagcttgtgtggtgtgtgtatggggttaagatgttggcttatatatggaacc 6446466  T
Q  108 tttgtaattttccttacaattttgcagcttgtgcgtcttgtacggatttgc-tttcaataaaatttgctaattca 181  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  6446467 tttgtaattttccttacgattttgcagcttgtgcgtcttgtacgggtttgcttttcaataaaatttgctaattca 6446541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 202 - 353
Target Start/End: Original strand, 6446566 - 6446717
Alignment:
Q  202 gattcaggataaggattatgtttgtgttagatttatcatattttcactgaattgtgtatattcgactacttacttgcattcgaaaatacagaaaaatcaa 301  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6446566 gattcagaataaggattatgtttgtgttagatttatcatattttcacttaattgtgtatattcgactacttacttgcattcgaaaatacacaaaaatcaa 6446665  T
Q  302 atgacattaaatttgaggtcgaaattttaaagtaattctcataacttcacca 353  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  6446666 atgacattaaatttgaggtcgaaattttgaagtaattctcatgacttcacca 6446717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 39099266 - 39099304
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttta 368  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  39099266 aaagtcattctcatgacttcaccatagaattttccttta 39099304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 31570903 - 31570939
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttcctt 366  Q
    ||||| |||||||||||||||||||||||||||||||    
T  31570903 aaagttattctcataacttcaccatagaattttcctt 31570939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 31861929 - 31861895
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttcc 364  Q
    ||||| |||||||||||||||||||||||||||||    
T  31861929 aaagtcattctcataacttcaccatagaattttcc 31861895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 2325539 - 2325576
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttt 367  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  2325539 aaagtcattcacataacttcaccatagaattttccttt 2325576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 19073385 - 19073356
Alignment:
Q  336 attctcataacttcaccatagaattttcct 365  Q
    ||||||||||||||||||||||||||||||    
T  19073385 attctcataacttcaccatagaattttcct 19073356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 367
Target Start/End: Original strand, 22974229 - 22974260
Alignment:
Q  336 attctcataacttcaccatagaattttccttt 367  Q
    ||||||||||||||||||||||||||||||||    
T  22974229 attctcataacttcaccatagaattttccttt 22974260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 15724524 - 15724490
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttcc 364  Q
    ||||| |||||||||||||||||||||||||||||    
T  15724524 aaagtcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 8742028 - 8742065
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttt 367  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  8742028 aaagtcattctcatgacttcaccatagaattttccttt 8742065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 19119893 - 19119856
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttt 367  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  19119893 aaagtcattctcatgacttcaccatagaattttccttt 19119856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 365
Target Start/End: Original strand, 7327634 - 7327669
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttcct 365  Q
    ||||| ||||||||||||||||||||||||||||||    
T  7327634 aaagtcattctcataacttcaccatagaattttcct 7327669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 53175748 - 53175711
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttt 367  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  53175748 aaagtcattctcataacttcaccataaaattttccttt 53175711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 364
Target Start/End: Original strand, 7235184 - 7235218
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttcc 364  Q
    ||||| |||||||||||||||||||||||||||||    
T  7235184 aaagtcattctcataacttcaccatagaattttcc 7235218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 4318973 - 4319010
Alignment:
Q  330 aaagtaattctcataacttcaccatagaattttccttt 367  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  4318973 aaagtcattctcatgacttcaccatagaattttccttt 4319010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 51169994 - 51169948
Alignment:
Q  130 tgcagcttgtgcgtcttgtacggatttgctttcaataaaatttgcta 176  Q
    ||||||||||||||||||||||   ||||||||||||| ||||||||    
T  51169994 tgcagcttgtgcgtcttgtacgagcttgctttcaataatatttgcta 51169948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University