View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5181-Insertion-3 (Length: 131)
Name: NF5181-Insertion-3
Description: NF5181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5181-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 7154024 - 7154147
Alignment:
| Q |
8 |
aattgaagatgcaatatctaacccaatcttttgaactttacnnnnnnnnnnnnnaaatataaaaaatgtacacaatttgatatttcaggacgtatttgtt |
107 |
Q |
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| T |
7154024 |
aattgaagatgcaatatctaacccaatcttttgaactttactttttatttttttaaatataaaaaatgtacacaatttgatatttcaggacgtatttgtt |
7154123 |
T |
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| Q |
108 |
gctggaactgatacaacatcgaca |
131 |
Q |
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| T |
7154124 |
gccggaactgatacaacatcgaca |
7154147 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 7141335 - 7141377
Alignment:
| Q |
89 |
atttcaggacgtatttgttgctggaactgatacaacatcgaca |
131 |
Q |
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| T |
7141335 |
atttcaggatgtatttgttgctggaactgatacatcatcgaca |
7141377 |
T |
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