View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5181_high_4 (Length: 347)
Name: NF5181_high_4
Description: NF5181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5181_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 53 - 329
Target Start/End: Complemental strand, 31809349 - 31809074
Alignment:
| Q |
53 |
ttagattttaattatttgtgctcttgacaaatttttatttttgtcaaataaaggaaactgttcagtaaattnnnnnnnnnnnnnngaagaggaaatggta |
152 |
Q |
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| T |
31809349 |
ttagattttaattatttgtgctcttgacaaaaaaaaaaatt-gtcaaataaaggaaactgttcagtaaattaaaaaaaaaaaaaaaaagaggaaatggta |
31809251 |
T |
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| Q |
153 |
taataaatacaatattatttaaaactgacttaaatgtatttattttcaacttattttgttgtaggccataaagactgttgacaaacacttggagaagatg |
252 |
Q |
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| T |
31809250 |
taataaatacaatattatttaaaactgacttaaatgtatttattttcaacttattttgttgtaggccataaagactgtttacaaacacttggagaagatg |
31809151 |
T |
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| Q |
253 |
gtacaattatccattgcaacaacaatagcttgcaatacacttgccacccttaggaaacttactttttgcacaataat |
329 |
Q |
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| T |
31809150 |
gtacaattatccattgcaacaacaatagcttgcaatacacttgccacccttaggaaacttactttttgcacaataat |
31809074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 31809644 - 31809598
Alignment:
| Q |
9 |
gagaagaatgcagggatttgaagggtgtgaaatatagagaaatatta |
55 |
Q |
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| T |
31809644 |
gagaagaatgcagggatttggagggtgtaaaatatagagaaatatta |
31809598 |
T |
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