View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5181_high_6 (Length: 304)
Name: NF5181_high_6
Description: NF5181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5181_high_6 |
 | |
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| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0455 (1 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
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|
| [»] scaffold0853 (1 HSPs) |
| | |
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| [»] scaffold0144 (2 HSPs) |
| | |
|
| [»] scaffold0429 (1 HSPs) |
| | |
|
| [»] scaffold0903 (1 HSPs) |
| | |
|
| [»] scaffold0077 (1 HSPs) |
| | |
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| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 19647067 - 19646767
Alignment:
| Q |
13 |
aaaatattcacaaacacctctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaac------ |
106 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19647067 |
aaaatattcacaaacacctttcacttttctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaacctcatg |
19646968 |
T |
|
| Q |
107 |
---atgaagaacactatgaacacaaaatttccagcacactcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacacc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19646967 |
aacatgaagaacactatgaacacaaaatttccagcacactcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacacc |
19646868 |
T |
|
| Q |
204 |
aaaaccgaaccggtttccatctacataatcaaaacatggttcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19646867 |
aaaaccgaaccggtttccatctacataatcaaaacgtggttcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaag |
19646768 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
19646767 |
t |
19646767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 141 - 304
Target Start/End: Original strand, 18008408 - 18008571
Alignment:
| Q |
141 |
actcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaaccggtttccatctacataatcaaaacat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
18008408 |
actcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaaccggttttcatctacataatcaaaacgt |
18008507 |
T |
|
| Q |
241 |
ggttcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaagt |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18008508 |
gattcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaagt |
18008571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 5769 - 5469
Alignment:
| Q |
13 |
aaaatattcacaaacacctctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaac------ |
106 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5769 |
aaaatattcacaaacaccattcacttttctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaacctcatg |
5670 |
T |
|
| Q |
107 |
---atgaagaacactatgaacacaaaatttccagcacactcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacacc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5669 |
aacatgaagaacactatgaacacaaaatttccagcacactcaaatcatcacataatcaccataaaccaacagaatcaactcaactcatcacaaaaacacc |
5570 |
T |
|
| Q |
204 |
aaaaccgaaccggtttccatctacataatcaaaacatggttcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5569 |
aaaaccgaaccggtttccatctacataatcaaaacgtggttcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaag |
5470 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
5469 |
t |
5469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 141 - 304
Target Start/End: Original strand, 27977106 - 27977269
Alignment:
| Q |
141 |
actcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaaccggtttccatctacataatcaaaacat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
27977106 |
actcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaaccggttttcatctacataatcaaaacgt |
27977205 |
T |
|
| Q |
241 |
ggttcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaagt |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27977206 |
gattcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaagt |
27977269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 141 - 304
Target Start/End: Original strand, 13273235 - 13273398
Alignment:
| Q |
141 |
actcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaaccggtttccatctacataatcaaaacat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |
|
|
| T |
13273235 |
actcaaatcatcacataatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaatcggttttcatctacataatcaaaacgt |
13273334 |
T |
|
| Q |
241 |
ggttcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaagt |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13273335 |
gattcttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaatgaagt |
13273398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 43470140 - 43470077
Alignment:
| Q |
156 |
taatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaaccggttt |
219 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
43470140 |
taatcatcataaactcacagaatcaactcaaatcatcacataaacaccaaaaccgaaccggttt |
43470077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 5146304 - 5146251
Alignment:
| Q |
141 |
actcaaatcatcacataa-tcaccataaactaacagaatcaactcaactcatca |
193 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5146304 |
actcaaatcatcacataaatcaccataaacaaacagaatcaactcaactcatca |
5146251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 1006228 - 1006175
Alignment:
| Q |
146 |
aatcatcacataa-tcaccataaactaacagaatcaactcaactcatcacaaaa |
198 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||||||| ||||||||||||||| |
|
|
| T |
1006228 |
aatcatcacataaatcaccagaaacaaacataatcaacccaactcatcacaaaa |
1006175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0853 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0853
Description:
Target: scaffold0853; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 3737 - 3887
Alignment:
| Q |
13 |
aaaatattcacaaacacctctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaa---------g |
103 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3737 |
aaaatattcacaaacacctttcacttttctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaacctcatg |
3836 |
T |
|
| Q |
104 |
aacatgaagaacactatgaacacaaaatttccagcacactcaaatcatcac |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3837 |
aacatgaagaacactatgaacacaaaatttccagcacactaaaatcatcac |
3887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 24918637 - 24918787
Alignment:
| Q |
13 |
aaaatattcacaaacacctctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaa---------g |
103 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
24918637 |
aaaatattcacaaacacctttcatatttctctctcatccaaattcggatcaaaccacaaaaaatcaacaaaaatgatatgaacacctcaagaacctcatg |
24918736 |
T |
|
| Q |
104 |
aacatgaagaacactatgaacacaaaatttccagcacactcaaatcatcac |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24918737 |
aacatgaagaacactatgaacacaaaatttccagcacactaaaatcatcac |
24918787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 16634241 - 16634335
Alignment:
| Q |
13 |
aaaatattcacaaacacc-tctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaac |
106 |
Q |
| |
|
|||||||||||||||||| | | || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
16634241 |
aaaatattcacaaacacccttttacatttctctctcatccaaattcggatcaaaccacaaaaaatcaacaaaaatgatatgaatacctcaagaac |
16634335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 16643550 - 16643644
Alignment:
| Q |
13 |
aaaatattcacaaacacc-tctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaac |
106 |
Q |
| |
|
|||||||||||||||||| | | || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
16643550 |
aaaatattcacaaacacccttttacatttctctctcatccaaattcggatcaaaccacaaaaaatcaacaaaaatgatatgaatacctcaagaac |
16643644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 2122 - 2028
Alignment:
| Q |
13 |
aaaatattcacaaacacc-tctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaac |
106 |
Q |
| |
|
|||||||||||||||||| | | || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
2122 |
aaaatattcacaaacacccttttacatttctctctcatccaaattcggatcaaaccacaaaaaatcaacaaaaatgatatgaatacctcaagaac |
2028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 11302 - 11396
Alignment:
| Q |
13 |
aaaatattcacaaacacc-tctcactttcctctctcatccaaattcggatcaaaccacaaaagatcaacaaaaatgatatgaacacctcaagaac |
106 |
Q |
| |
|
|||||||||||||||||| | | || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11302 |
aaaatattcacaaacacccttttacatttctctctcatccaaattcggatcaaaccacaaaaaatcaacaaaaatgatatgaatacctcaagaac |
11396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 33308628 - 33308571
Alignment:
| Q |
141 |
actcaaatcatcacataa-tcaccataaactaacagaatcaactcaactcatcacaaa |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
33308628 |
actcaaatcatcacataaatcaccataaacaaacagaatcaactcaacacatcacaaa |
33308571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 13152 - 13225
Alignment:
| Q |
141 |
actcaaatcatcacataa-tcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaac |
213 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||| ||||||||||||| || |||| ||||||||||||| |
|
|
| T |
13152 |
actcaaatcatcacgtaaatcaccataaacaaacagagtcaactcaactcagcataaaagtaccaaaaccgaac |
13225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0903 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 3864 - 3924
Alignment:
| Q |
153 |
acataatcaccataaactaacagaatcaactcaactcatcacaaaaacaccaaaaccgaac |
213 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| ||| |||| ||| ||||||||||||| |
|
|
| T |
3864 |
acataatcatcataaactcacagaatcaactcaaatcaccacataaataccaaaaccgaac |
3924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 30704 - 30779
Alignment:
| Q |
145 |
aaatcatcacataatcaccataaactaacagaa-tcaactcaactcatcacaaaaacaccaaaaccgaaccggttt |
219 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||||||||| || ||||| ||||||||||||||| ||||||| |
|
|
| T |
30704 |
aaatcatcacataaacaccataaacttgcaaaaatcaactcaaatcgtcacataaacaccaaaaccgagccggttt |
30779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 3419 - 3367
Alignment:
| Q |
246 |
ttcatcaccaacaccaacaatttcgagtcaagcaaagaagaagagaaggaaaa |
298 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||| |||||||||| ||||| |||| |
|
|
| T |
3419 |
ttcatcaccaacatcaacattttcgagccaaacaaagaagaaaagaagtaaaa |
3367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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