View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5181_low_3 (Length: 411)

Name: NF5181_low_3
Description: NF5181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5181_low_3
NF5181_low_3
[»] chr7 (2 HSPs)
chr7 (1-254)||(28470141-28470394)
chr7 (14-189)||(5229937-5230112)
[»] chr8 (5 HSPs)
chr8 (13-195)||(12811915-12812097)
chr8 (14-164)||(34830908-34831058)
chr8 (70-165)||(12772269-12772364)
chr8 (70-165)||(12791129-12791224)
chr8 (41-89)||(27527556-27527604)
[»] chr2 (3 HSPs)
chr2 (13-143)||(30642895-30643024)
chr2 (70-155)||(5546362-5546447)
chr2 (68-113)||(2115269-2115314)
[»] chr5 (1 HSPs)
chr5 (18-176)||(20543499-20543657)
[»] chr6 (1 HSPs)
chr6 (68-181)||(22611520-22611633)
[»] chr4 (2 HSPs)
chr4 (15-164)||(45671368-45671517)
chr4 (70-143)||(42506647-42506720)
[»] chr3 (1 HSPs)
chr3 (41-152)||(38396710-38396821)
[»] chr1 (1 HSPs)
chr1 (82-181)||(46039592-46039691)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 28470141 - 28470394
Alignment:
Q  1 agagagtgataagaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470141 agagagtgataagaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtt 28470240  T
Q  101 tgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagttcaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470241 tgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagttcaac 28470340  T
Q  201 ttcagggtacccttctctctctttttcattcatctaatattaaaaaatctcacc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470341 ttcagggtacccttctctctctttttcattcatctaatattaaaaaatctcacc 28470394  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 5229937 - 5230112
Alignment:
Q  14 aaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc 113  Q
    |||||||||| ||||| || |||||  ||||||||||||| ||||| || ||| | |||||||| ||  | || |||||||||||| | || || |||||    
T  5229937 aaaaaatgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagc 5230036  T
Q  114 ctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaattt 189  Q
     |||||||| || ||||| |||||||||||| ||||||||||||| ||||| | |||||||||||||| |||||||    
T  5230037 ttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaattt 5230112  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 12812097 - 12811915
Alignment:
Q  13 gaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaag 112  Q
    ||||||||||| ||||| || |||||| ||||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| || ||||    
T  12812097 gaaaaaatgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaag 12811998  T
Q  113 cctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagt 195  Q
    | |||||||| || ||||| |||||||||||  |||| |||||||||||||| || ||||| || || | |||||||| ||||    
T  12811997 cttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaatttggaagt 12811915  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 34831058 - 34830908
Alignment:
Q  14 aaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc 113  Q
    |||||||||| ||||| || |||||  ||||||| || || |||||||||||| | |||||||| ||| | ||| |||| || ||| |  ||||||||||    
T  34831058 aaaaaatgggaagaggaagagttgagttgaagagaattgagaacaaaatcaacagacaagttaccttcgctaaacgaaggaacggtcttttgaaaaaagc 34830959  T
Q  114 ctatgaactctcagttctatgtgatgctgagattgctcttatcattttctc 164  Q
     |||||||| || ||||| |||||||||||  ||||||||||||| |||||    
T  34830958 ttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctc 34830908  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 12772269 - 12772364
Alignment:
Q  70 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca 165  Q
    ||||| || |||||||| ||||||||||||||| |||| || |||| |||||| |||||  |||||||||||||| ||||||||||  ||||||||    
T  12772269 caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca 12772364  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 12791129 - 12791224
Alignment:
Q  70 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca 165  Q
    ||||| || |||||||| ||||||||||||||| |||| || |||| |||||| |||||  |||||||||||||| ||||||||||  ||||||||    
T  12791129 caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca 12791224  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 27527604 - 27527556
Alignment:
Q  41 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaag 89  Q
    ||||||||||||||||||| ||||| || || ||||||||||| |||||    
T  27527604 tgaagaggatagaaaacaagatcaatcgtcaggttactttctctaaaag 27527556  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 30643024 - 30642895
Alignment:
Q  13 gaaaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaag 112  Q
    ||||||||||| ||||| || |||||| ||||||| ||||| |||||||| |||| |||||  ||||||||||| ||||||||||||||||| |||||||    
T  30643024 gaaaaaatgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccagcaagcaactttctcaaagagaagaaatggtttgctcaaaaaag 30642925  T
Q  113 cctatgaactctcagttctatgtgatgctga 143  Q
    | |||||||| || ||||  |||||||||||    
T  30642924 cttatgaactgtctgttc-ctgtgatgctga 30642895  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 5546362 - 5546447
Alignment:
Q  70 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttat 155  Q
    ||||| |||||||  |||||||||||||||||| |||| ||||| |||||| | || ||||| |||||||| ||  ||||||||||    
T  5546362 caagtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttat 5546447  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 2115269 - 2115314
Alignment:
Q  68 ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc 113  Q
    ||||||| ||||||||||||||||||||||| ||| |||| |||||    
T  2115269 ggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagc 2115314  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 20543657 - 20543499
Alignment:
Q  18 aatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctat 117  Q
    ||||||||| || | ||| || || |||||||| || |||||||| || || |||||||| ||  |||| |||||||||||  ||||||| || || |||    
T  20543657 aatgggtaggggaaaggtagagctaaagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttat 20543558  T
Q  118 gaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaa 176  Q
    ||||||||  | || |||||||||||| ||||||| || |||||||| || ||||||||    
T  20543557 gaactctctctcctttgtgatgctgaggttgctctcattattttctctagccgtggaaa 20543499  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 22611520 - 22611633
Alignment:
Q  68 ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaag 167  Q
    ||||||| || |||||||| ||||||| ||| ||| |||| ||||||| ||| || |  |||||||||||||||||  |||| ||||||||||| |||||    
T  22611520 ggcaagtaacattctcaaagagaagaagtggattgttgaagaaagcctttgagctttgtgttctatgtgatgctgaagttgcacttatcattttttcaag 22611619  T
Q  168 tcgtggaaagcttt 181  Q
     ||||| |||||||    
T  22611620 ccgtggcaagcttt 22611633  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 45671368 - 45671517
Alignment:
Q  15 aaaaatgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcc 114  Q
    ||||||||| |||||||| |||||||| ||||| ||||| |||||| | ||  | ||||| || ||  | || |||||||||||| | || || || ||     
T  45671368 aaaaatgggaagagggagagttgaactaaagagaatagagaacaaagttaatagacaagtcacatttgctaagagaagaaatggtgtactcaagaaggct 45671467  T
Q  115 tatgaactctcagttctatgtgatgctgagattgctcttatcattttctc 164  Q
    |||||||| |||||||| |||||||||||  ||||||||||||| |||||    
T  45671468 tatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctc 45671517  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 42506720 - 42506647
Alignment:
Q  70 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctga 143  Q
    ||||| ||||||||||| |||||||||||  |||| ||||| |||| |||||| ||||| || |||||||||||    
T  42506720 caagtaactttctcaaagagaagaaatggactgcttaaaaaggcctttgaactttcagtgctttgtgatgctga 42506647  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 38396710 - 38396821
Alignment:
Q  41 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgc 140  Q
    ||||||| || || ||||| |||||| | |||||||| ||  ||||| ||||||||||| |  |||||||||| |||||||| || ||||| ||||||||    
T  38396710 tgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgc 38396809  T
Q  141 tgagattgctct 152  Q
     ||| |||||||    
T  38396810 agaggttgctct 38396821  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 46039691 - 46039592
Alignment:
Q  82 tcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagcttt 181  Q
    ||||| ||||||| ||||||| |||| ||||| | |||||| || ||  |||||||||||||  ||||||||||||| ||||| |||| ||| |||||||    
T  46039691 tcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctccagtcttggcaagcttt 46039592  T

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