View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5182-Insertion-10 (Length: 315)
Name: NF5182-Insertion-10
Description: NF5182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5182-Insertion-10 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 29596679 - 29596372
Alignment:
| Q |
8 |
gagtttaatattgacttattggctatggataaaaatgtactcctctcattaatttagtgacttttggttattccccaatgttttgttgattggtaattct |
107 |
Q |
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| T |
29596679 |
gagtttaatattgacttattggctatggataaaaatgtactcctctcattaatttagtgacttttggttattccccaatgttttgttgattggtaattct |
29596580 |
T |
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| Q |
108 |
ctatcaatctttgaattatttctgctaatttcagaaagctaaacatcaagagaatataacatggtttctacttctgtagtgtgaaaagcacatatgctct |
207 |
Q |
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| T |
29596579 |
ctatcaatctttgaattatttctgctaatttcagaaagctaaacatcaagagaatataacatggtttctacttctgtagtgtgaaaagcacatatgctct |
29596480 |
T |
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| Q |
208 |
tatttaatatcttaacagtttcttttgtgctgttagtcatatgcttgcagtggttcattttacaatctaggtccacgagaaccctagtgtagtgaccgaa |
307 |
Q |
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| T |
29596479 |
tatttaatatcttaacagtttcttttgtgctgttagtcatatgcttgcagtggttcattttacaatctaggtccacgagaaccctagtgtagtgaccgaa |
29596380 |
T |
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| Q |
308 |
aacccgat |
315 |
Q |
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|||||||| |
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| T |
29596379 |
aacccgat |
29596372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 29648613 - 29648785
Alignment:
| Q |
7 |
agagtttaatattgacttattggctatggataaaaatgtactcctctcattaatttagtgacttttggttattccccaatgttttgttgattggtaattc |
106 |
Q |
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| T |
29648613 |
agagtttaataccgactcattggctatgga---aaatgtactcttcttattaatttagtgtcttttggttgttccccaaagttttgttgattggtaattc |
29648709 |
T |
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| Q |
107 |
tctatcaatctttgaattatttctgctaatttcagaaagctaaacatcaagagaatataacatggtttctacttct |
182 |
Q |
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| T |
29648710 |
tctaccaatctttgaattatttctgctaattccagtaagctcagcatcaagagaatataacatggcttctacttct |
29648785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 29643424 - 29643566
Alignment:
| Q |
40 |
aaatgtactcctctcattaatttagtgacttttggttattccccaatgttttgttgattggtaattctctatcaatctttgaattatttctgctaatttc |
139 |
Q |
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| T |
29643424 |
aaatgtactcttcttattaatttagtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgaattatttctgctaattcc |
29643523 |
T |
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| Q |
140 |
agaaagctaaacatcaagagaatataacatggtttctacttct |
182 |
Q |
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| T |
29643524 |
agtaagctcagcatcaagagaatataacatggcttctacttct |
29643566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 29648838 - 29648911
Alignment:
| Q |
187 |
tgtgaaaagcacatatgctcttatttaatatcttaacagtttcttttgtgctgttagtcatatgcttgcagtgg |
260 |
Q |
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| T |
29648838 |
tgtgaaaagtacatatgctctcatttaatatcttaacaacttcatttgtgctgttagtcatatgctttcagtgg |
29648911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 19820154 - 19820260
Alignment:
| Q |
74 |
gttattccccaatgttttgttgattggtaattctctatcaatctttgaattatttctgctaatttcagaaagctaaacatcaagagaatataacatggtt |
173 |
Q |
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| T |
19820154 |
gttattctccaaagttttgttgattggtaattccctatcaatctttgaattatttctgctaatttcagcaagcttggcatcaagagaatatatcatggct |
19820253 |
T |
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| Q |
174 |
tctactt |
180 |
Q |
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| T |
19820254 |
tctactt |
19820260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 20863729 - 20863668
Alignment:
| Q |
80 |
ccccaatgttttgttgattggtaattctctatcaatctttgaattatttctgctaatttcag |
141 |
Q |
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| T |
20863729 |
ccccaaagttttcttgattggtgattccctatcaatctttgaattctttctgcaaatttcag |
20863668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 24254029 - 24253968
Alignment:
| Q |
80 |
ccccaatgttttgttgattggtaattctctatcaatctttgaattatttctgctaatttcag |
141 |
Q |
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| T |
24254029 |
ccccaaagttttgttgattgataattccctatcaaactttgaattctttcagcaaatttcag |
24253968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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