View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5182-Insertion-2 (Length: 1149)
Name: NF5182-Insertion-2
Description: NF5182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5182-Insertion-2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 279 - 737
Target Start/End: Complemental strand, 7779155 - 7778696
Alignment:
| Q |
279 |
tggatcttcaacagaacaacctgattattgtctgctaacttctagtggccggaacgttctgacactattacaggtgtgttcaattaccatataatattat |
378 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
7779155 |
tggatcttcaaaagaacaacctgattattgtctgctaacttctagtggccagaacgttctgacactattacaggtgtgttcaattaccatata---ttat |
7779059 |
T |
|
| Q |
379 |
taaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttgacagttgatacaccgcatttatgtcggtctaatctctaatgtgat |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
7779058 |
taaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttaacagttgatacaccgcatttatgtcggtctaatctctaatctgat |
7778959 |
T |
|
| Q |
479 |
actataacttaatgttgaacgttgtttctacttaacaactaaacacaacagattgtaaattgtaactaacataaattatttttaagaccttatactcttg |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778958 |
actataacttaatgttgaacgttgtttctacttaacaactaaacacaacagattgtaaattgtaactaacataaattatttttaagaccttatactcttg |
7778859 |
T |
|
| Q |
579 |
cgttgcatgggttcataatattagtacataacatatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatggaaa |
678 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778858 |
cgttgcatgggttcataatactagtacataacatatttgattgacaataatcaggccgttgcagaagacatttctccattagttgaacttgaaatggaaa |
7778759 |
T |
|
| Q |
679 |
tttagtcattagtggactcaa-gaatccctt---taatgagtatattatcatgcttgaaagag |
737 |
Q |
| |
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||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||||||||| |
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|
| T |
7778758 |
tttagtcattagtggactcaaggaatctctttaataatgagtatattatcatacttgaaagag |
7778696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 939 - 970
Target Start/End: Complemental strand, 7779525 - 7779494
Alignment:
| Q |
939 |
ggttatgacagtagtgcttttattttctattt |
970 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
7779525 |
ggttatgacagtagtgcttttattttctattt |
7779494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 283 - 802
Target Start/End: Complemental strand, 30275840 - 30275321
Alignment:
| Q |
283 |
tcttcaacagaacaacctgattattgtctgctaacttctagtggccggaacgttctgacactattacaggtgtgttcaattaccatataatattattaaa |
382 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
30275840 |
tcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttcaattaccataca---ttattaaa |
30275744 |
T |
|
| Q |
383 |
cattactgatgtgttttgattttctgtttagctttatcaaagaagcatttgacagttgatacaccgcatttatgtcggtctaatctctaatgtgatacta |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||| |||||||||| |
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|
| T |
30275743 |
cattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctctattgtgatacta |
30275644 |
T |
|
| Q |
483 |
taacttaatgttgaacgttgtttctacttaacaactaaacacaacagattgtaaattgtaactaacataaattatttttaagaccttatactcttgcgtt |
582 |
Q |
| |
|
||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
30275643 |
taatttaatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgcgtt |
30275544 |
T |
|
| Q |
583 |
gcatgggttcataatattagtacataac--atatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaat-ggaaat |
679 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
30275543 |
gcatgggttcataatactaggacataacatatatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatgggaaat |
30275444 |
T |
|
| Q |
680 |
ttagtcattagtggactcaagaatccctttaatgagtatattatcatgcttgaaagagttctaacttatgaaacaagtgcaatggagcaagatagttcta |
779 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
30275443 |
ttagttattagcggactcaagaatctctttaatgagtatattatcatacttgaaagagcccttacttatgaaacaagtgcaacggagcaagatagttcta |
30275344 |
T |
|
| Q |
780 |
gattcaagttacctgagtcactt |
802 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
30275343 |
gaatcaagttacctgagtcactt |
30275321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 803 - 924
Target Start/End: Complemental strand, 30275284 - 30275162
Alignment:
| Q |
803 |
ttggtgcagtttctctctactatggtcaaagatatctttatcatgtattcacaattggtggagaaccactcagttggtcttaagcatcatgaacttgatg |
902 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
30275284 |
ttggtgcagtttctctctaccatggtcaaagatatcttcagcatggattcacaattggtggagaaccactcagttggttttaagcatcatgaactcgatg |
30275185 |
T |
|
| Q |
903 |
-ttttctgatgtttattgaagag |
924 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
30275184 |
tttttctgatgtttattgaagag |
30275162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 543207 - 543449
Alignment:
| Q |
7 |
atcatattccatgcaaaattaatgaaaaggaaaagaagatgaagtgaatataaaacctaatcaaaagccacgatatagaggttggtgaccgtcaatagaa |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
543207 |
atcatattccatgctaaattaatgaaaaggaaaagaagatgaagtgaatataaagcccaatcaaaagccacgatacagaggttggtgaccgtcaatggaa |
543306 |
T |
|
| Q |
107 |
ggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactcttttacatactggt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
543307 |
ggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactcttttacggactcgt |
543406 |
T |
|
| Q |
207 |
gcgatttgcacgacnnnnnnngtcgtgcacaatagcatttttc |
249 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
543407 |
gcgatttgcatgactttttttgtcgtgcacaatagcatttttc |
543449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 26182531 - 26182732
Alignment:
| Q |
8 |
tcatattccatgcaaaattaatgaaaaggaaaagaaga---tgaagtgaatataaaacctaatcaaaagccacgatatagaggttggtgaccgtcaatag |
104 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||| |||| ||||||||||| | || ||||||| |||||||||||||||| |
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|
| T |
26182531 |
tcatattccatgcaaaatataagaaagggaaaagaagaagatgaattgaatataaaaaccaaacaaaagctacgatatagaggttgg------------- |
26182617 |
T |
|
| Q |
105 |
aaggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaagctcactcttttacatactg |
204 |
Q |
| |
|
|||||| |||| ||||||||||||| ||| | |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| | | |
|
|
| T |
26182618 |
aaggcaatagacaggtggaaagatagtcacagatattgttgggcaaatcagaattaaaaaacacagtaattgaatggcaagctcactcttataccgattc |
26182717 |
T |
|
| Q |
205 |
gtgcgatttgcacga |
219 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
26182718 |
gtgtgatttgcacga |
26182732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 8e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 35752324 - 35752210
Alignment:
| Q |
68 |
caaaagccacgatatagaggttggtgac---cgtcaatagaaggcactagagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaa |
164 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||| |||| || |||||| ||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
35752324 |
caaaagtcacgatatagaggttggtaactaccgtcaatggaagacatcagagagacggaaagatagtcataaatattgttgggcatatgagaattaaaaa |
35752225 |
T |
|
| Q |
165 |
acaaagtaattgaat |
179 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
35752224 |
gcacagtaattgaat |
35752210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 30038808 - 30038670
Alignment:
| Q |
20 |
caaaattaatgaaaaggaaaagaagatgaagtgaatataaaacctaatcaaaagccacgatatagaggttggtga---ccgtcaatagaaggcactagag |
116 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||| ||| | || |||||| |||| ||||||||| | |||||||| ||||||||||||| |
|
|
| T |
30038808 |
caaaatcaaagaaaaataaaagaagatgaagtgaatatcaaaaccaagcaaaagt----atatggaggttggtaagcaccgtcaatggaaggcactagag |
30038713 |
T |
|
| Q |
117 |
aggtggaaagatactcataaatattgttgggcaaatgagaatt |
159 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
30038712 |
tagtggaaatatagtcataaatattgttgggaaaatgagaatt |
30038670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 35753205 - 35753152
Alignment:
| Q |
8 |
tcatattccatgcaaaattaatgaaaaggaaaagaagatgaagtgaatataaaa |
61 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
35753205 |
tcatattccatgcaaaattaaagaaaatgaaaagaagacgaagtgaatataaaa |
35753152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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