View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5182-Insertion-3 (Length: 911)
Name: NF5182-Insertion-3
Description: NF5182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5182-Insertion-3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 682; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 23 - 907
Target Start/End: Complemental strand, 3004089 - 3003208
Alignment:
| Q |
23 |
aacatatctttacacatatacacaattttagatttgaaagaaacatcacaaaaattttagatagagttattagtctaatggattttaaaaagtaaaaatg |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3004089 |
aacatatctttacacataaacacaattttagatttgaaagaaacatcacaaaaattttagatagagttattagtctaatggattttaaaaagtaaaaatg |
3003990 |
T |
|
| Q |
123 |
gcagaactaagaatccctcaagttctcattgttatcgagagaatatataatatgttagtacataaattttggaatgtgtagccttctggtatacttttaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3003989 |
gcagaactaagaatccctcaagttctcattgttattgagagaatatataatatgttagtacataaattttggaatgtgtagccttctggtatacttttaa |
3003890 |
T |
|
| Q |
223 |
tcggtaatagtatgtgtttaaacaaaactttagttatatcacatatgaactcttaattaccagaatgnnnnnnnnnnnnnnnnnnnataattattagaga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
3003889 |
tcggtaatagtatgtgtttaaacaaaactttagttatatcacatatgaactcttaattatcagaatgttttttattttttatttttataattattagaga |
3003790 |
T |
|
| Q |
323 |
tattagtagtcggtaagatgtagtatgtgtttggattagcttttgcactggaaatttcacatcccgaggcaagttggacatgaaaatcgtgaggctaaag |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3003789 |
tattagtagtcggtaagatgtagtatgtgtttggattagcttttgcactggaaatttcacgtcccgaggcaagctggacatgaaaatcgtgaggctaaag |
3003690 |
T |
|
| Q |
423 |
atgtgaccgcttttgtaacnnnnnnnnnnnnnngaactactctgtttgcttgtctcgtggtaaactcgacagttagaggtaaaaagaggacaaatgtcta |
522 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3003689 |
atgtgaccgcttttgtaacaaaaaaacaaaat--aactactccgtttgcctgtctcgtggtaaactcgacagttagaggtaaaaagaggacaaatgtcta |
3003592 |
T |
|
| Q |
523 |
caataagaaataatagcactaaactcgatacatcttccttaatagattgaaggttgtctaccattcgctcagggtcaagctcaaaagttgctccatctaa |
622 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003591 |
caataagaaataatagcactaaactcgagacatcttccttaatagattgaaggttgtctaccattcgctcagggtcaagctcaaaagttgctccatctaa |
3003492 |
T |
|
| Q |
623 |
ctgcaaatggtgcacctaccagacagcggaaagaaggccacaagcttcaccttcattaatgaaacaaatggaagagtgacactccgttctagcaagcaca |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3003491 |
ctgcaaatggtgcacctaccagacagcggaaagaaggccacaagcttcaccttcattaatgaaacaaatggaagagtgacactccgttctagcaagcaca |
3003392 |
T |
|
| Q |
723 |
aagcgtccaaacttggcgtgtctggnnnnnnnccctgcactgctgtcgaacctgcactgatgtaccgctgc-cctgcaccagctttgaaataactgctca |
821 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
3003391 |
aagcgtccaaacttggcgtatctggtttttttccctgcactgctgtcgaacctgcactgatgtaccgctgcacctgcaccagctttgaaataactactca |
3003292 |
T |
|
| Q |
822 |
ccgcgccaaaaaatatgctgctattgttaacaaacattctcctagatgcggaatatcacgacttttccaaatacctccaaataata |
907 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
3003291 |
gcgcgccaaaaaatatgctgctgttgttaacaaacattctcctagatgcgg-atatcacgacttttccgaata-ctccaaataata |
3003208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 11429782 - 11429835
Alignment:
| Q |
348 |
tgtgtttggattagcttttgcactggaaatttcacatcccgaggcaagttggac |
401 |
Q |
| |
|
|||||||||| |||||||||| || |||| |||| |||||||||||||||||| |
|
|
| T |
11429782 |
tgtgtttggaatagcttttgcggtgtaaatatcacgtcccgaggcaagttggac |
11429835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 4160226 - 4160387
Alignment:
| Q |
23 |
aacatatctttacacatatacacaattttagatttgaaagaaacatcacaaaaattttagatagagttattagtctaatggattttaaaaagtaaaaatg |
122 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4160226 |
aacatacctatacacatatacacaattttagatttgaaagaaacatcaaaaaaaatttagatagagttattagtctaatggattttaaaaagtaagaatg |
4160325 |
T |
|
| Q |
123 |
gcagaactaagaatccctcaagttctcattgttatcgagagaatatataatatgttagtaca |
184 |
Q |
| |
|
| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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|
| T |
4160326 |
gtagaactaagaatccctcaagttctcattgtcattgagagaatatacaatatgttagtaca |
4160387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 6726092 - 6726026
Alignment:
| Q |
344 |
agtatgtgtttggattagcttttgcactggaaatttcacatcccgaggcaagttggacatgaaaatc |
410 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||| |||||||||||||||||| |||| || ||||| |
|
|
| T |
6726092 |
agtatgagtttggattagcttttgcaccgtaaatctcacatcccgaggcaagtaggacttggaaatc |
6726026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 54654146 - 54653978
Alignment:
| Q |
23 |
aacatatctttacacatatacacaattttagatttgaaagaaacatcacaaaaattttagatagagttattagtctaatggattttaaaaagtaaaaa-t |
121 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
54654146 |
aacatacctttacacata--cacaattttagatttgaaagaaacatcacaaaatttttagatagagttattagtctaatggatttaaaaaaaaaaaaaat |
54654049 |
T |
|
| Q |
122 |
ggcagaactaagaatccctcaagttctcattgttatcgagagaatatataatatgttagtacataaatttt |
192 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54654048 |
gtcagaactaaaaatccctcaagttctcattgttatcgagagaatatataatatgttagtacataaatttt |
54653978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 51305388 - 51305329
Alignment:
| Q |
350 |
tgtttggattagcttttgcactggaaatttcacatcccgaggcaagttggacatgaaaat |
409 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
51305388 |
tgtttggattagcttttgcagtgaaaatatcacgtcccgaggcaagttggatgtgaaaat |
51305329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 24760888 - 24760721
Alignment:
| Q |
23 |
aacatatctttacacatatacacaattttagatttgaaagaaacatcacaaaaattttagatagagttattagtctaatggattttaaaaagtaaaaatg |
122 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
24760888 |
aacatacctatacacatatacacaattttagatttgaaagaaacatcacaaaaattttagataa--ttattagtctaatggattttcaaaagtaagaatg |
24760791 |
T |
|
| Q |
123 |
gcagaactaagaatccctcaagttctcattgttatcgagagaatatataatatgttagtacataaatttt |
192 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
24760790 |
gaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgttagtacaaaaatttt |
24760721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 52128323 - 52128156
Alignment:
| Q |
23 |
aacatatctttacacatatacacaattttagatttgaaagaaacatcacaaaaattttagatagagttattagtctaatggattttaaaaagtaaaaatg |
122 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
52128323 |
aacatacctatacacatatacacaattttagatttgaaagaaacatcacaaaaattttagataa--ttattagtctaatggattttcaaaagtaagaatg |
52128226 |
T |
|
| Q |
123 |
gcagaactaagaatccctcaagttctcattgttatcgagagaatatataatatgttagtacataaatttt |
192 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
52128225 |
gaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgttagtacaaaaatttt |
52128156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 49480222 - 49480279
Alignment:
| Q |
357 |
attagcttttgcactggaaatttcacatcccgaggcaagttggacatgaaaatcgtga |
414 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || |||||| ||| || ||||||||| |
|
|
| T |
49480222 |
attagcttttgcaccgcaaatttcacatcccaagacaagttagacgtggaaatcgtga |
49480279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 17302300 - 17302352
Alignment:
| Q |
343 |
tagtatgtgtttggattagcttttgcactggaaatttcacatcccgaggcaag |
395 |
Q |
| |
|
||||| ||||||||||||||||||||| || |||| |||||||||| |||||| |
|
|
| T |
17302300 |
tagtacgtgtttggattagcttttgcaatgcaaatatcacatcccggggcaag |
17302352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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