View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5182-Insertion-6 (Length: 586)
Name: NF5182-Insertion-6
Description: NF5182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5182-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 574
Target Start/End: Complemental strand, 25524724 - 25524157
Alignment:
| Q |
8 |
aaaggaattgtagctagtagagcttatgaattctccgtataagcaagcactctgtttgtatgaaaggtctctttggatttactaattttgggagtatctg |
107 |
Q |
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| T |
25524724 |
aaaggaattgtagctagtagagcttatgaattctccgtataagcaagcactctgtttgtatgaaaggcctctttggatttactaattttgggagtatctg |
25524625 |
T |
|
| Q |
108 |
ggctcttttggtatatgcactttatagagctcttttagtactctatggatatatttttggcttaactttttggttattttgtaa-ttatccttttgatgc |
206 |
Q |
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| T |
25524624 |
ggctcttttggtatatgcactttatagagctcttttagtactctatggatatatttttggcttaactttttggttattttgtaaattatctttttgatgc |
25524525 |
T |
|
| Q |
207 |
atttagactacgcggggtactactctatggattgattttgcctactgcttgttactcaatggagaggttgaaacaacagagagatgatccccatgtttac |
306 |
Q |
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| T |
25524524 |
atttagactacgcggggtactactctatggattgattttgcctactgcttgttactcaatggagagattgaaacaacagagagatgatccccacgtttac |
25524425 |
T |
|
| Q |
307 |
cttccattatttgtctcatgtgaagacaacattgatagcacgttttgtgtgtttgtttcgttatgcaccctgctttgaagttaataatgctttttggtgc |
406 |
Q |
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| T |
25524424 |
cttccattatttgcctcatgtgatgacaacattgatagcacgttttgtgtgtttgtttcgttatgcaccctgctttgaagttgataatgctttttggtgc |
25524325 |
T |
|
| Q |
407 |
cagtttagttatttgcattgttcccatgttgttttttctttggccttgtttacgattgttttaagtttctgcgtgttgcgttttaagtattagtagcttg |
506 |
Q |
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| T |
25524324 |
cagtttagttatttacattgttcccatgttgttttttctttggccttgtttacgattgttttaagtttctgcatgttgcgttttaagtattagtagcttg |
25524225 |
T |
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| Q |
507 |
tttatgcaagtttagttgtttt-aaatttgaaaggagtttgcaaaatttgaaaacctgattcttctcac |
574 |
Q |
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| T |
25524224 |
tttatgcaagtttagttgttttaaaatttgaaaggagtttgcaaaatttg-aaacctgattcttctcac |
25524157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 25540287 - 25540172
Alignment:
| Q |
15 |
ttgtagctagtagagcttatgaattctccgtataagcaagcactctgtttgtatgaaaggtctctttggatttactaattttgggagtatctgggctctt |
114 |
Q |
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| T |
25540287 |
ttgtagctagtgcagcttatgaactcttggtat----aagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctctt |
25540192 |
T |
|
| Q |
115 |
ttggtatatgcactttatag |
134 |
Q |
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| T |
25540191 |
ttggtatatgcactttatag |
25540172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 25525864 - 25525775
Alignment:
| Q |
267 |
ggagaggttgaaacaacagagagatgatccccat---gtttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttg |
353 |
Q |
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| T |
25525864 |
ggagaggttgaaacaatagagagatgatcctcatgtagtttaccttcctttatttgtttcacgtgaagagaagagtgatagcaggttttg |
25525775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 356
Target Start/End: Original strand, 26929995 - 26930088
Alignment:
| Q |
267 |
ggagaggttgaaacaacagagagatgatccccatg----tttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttgtgt |
356 |
Q |
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||||||||| ||||||||||||||||||||| | | |||||||| | |||||||||||||||||| ||| || | ||||| ||||||||| |
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| T |
26929995 |
ggagaggttaaaacaacagagagatgatccctaagttaatttaccttactttatttgtctcatgtgaacacatcagtagtagcaggttttgtgt |
26930088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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