View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5182-Insertion-7 (Length: 464)
Name: NF5182-Insertion-7
Description: NF5182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5182-Insertion-7 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 464
Target Start/End: Complemental strand, 5111386 - 5110929
Alignment:
| Q |
7 |
aatttgtactcaaatctaggtaccgtaacattgacaagtcggatatagattgaggaatagctccaacaaaattattgaagtaaagatccaaatgatgaag |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5111386 |
aatttgtactcaaatctaggtaccgtaacattgacaagtcggatatagattgaggaatagctccaacaaaattattaaagtaaagatccaaatgatgaag |
5111287 |
T |
|
| Q |
107 |
ttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5111286 |
ttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgtcactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggt |
5111187 |
T |
|
| Q |
207 |
aactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5111186 |
aactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtccatgttattaa |
5111087 |
T |
|
| Q |
307 |
gattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattact |
406 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
5111086 |
gatccaatgcattcactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagaggaaattgaccaattact |
5110987 |
T |
|
| Q |
407 |
aagaatgtgataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattca |
464 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5110986 |
aagaatatcataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattca |
5110929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 32 - 464
Target Start/End: Complemental strand, 5094358 - 5093926
Alignment:
| Q |
32 |
taacattgacaagtcggatatagattgaggaatagctccaacaaaattattgaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaa |
131 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||||||||| |||||| || || |||||| || |||||||||| ||| ||||||||||||||| |
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|
| T |
5094358 |
taacattgacaagttgaatatagattgaggaataactccaacaatattattatagctaatatccaattgttgaagttttgataactcccctatccttgaa |
5094259 |
T |
|
| Q |
132 |
ggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaactattgcctt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| | |
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| T |
5094258 |
ggaatttctccaacaaaatcattgttgcttaaattcaacaatttcaatcttttcaactgaagcaactcatgtggtaactcaccatggaaactattgccct |
5094159 |
T |
|
| Q |
232 |
gtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaagattcaatgcatttactcttccatg |
331 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
5094158 |
gtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggcccatgctactaagattcaatgcatttactcttccatg |
5094059 |
T |
|
| Q |
332 |
atgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattactaagaatgtgataagggtctaaggta |
431 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
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| T |
5094058 |
gtgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggtt |
5093959 |
T |
|
| Q |
432 |
attgaggatttgaatgcaagaagtgcaaattca |
464 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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| T |
5093958 |
attgaggatttgaatgcaagaagtgaaaattca |
5093926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 32 - 464
Target Start/End: Original strand, 5083710 - 5084142
Alignment:
| Q |
32 |
taacattgacaagtcggatatagattgaggaatagctccaacaaaattattgaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaa |
131 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||||||| ||| || || |||||| || |||||||||| ||||||||||||||||||| |
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| T |
5083710 |
taacattgacaagttggatatagattgaggaataactccaacaatattgttttgccgaatatccaattgttgaagttttgataagtcccctatccttgaa |
5083809 |
T |
|
| Q |
132 |
ggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaactattgcctt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
5083810 |
ggaatttctccaacaaaatcattgttgctcaaattcaacaatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactatttcctt |
5083909 |
T |
|
| Q |
232 |
gtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaagattcaatgcatttactcttccatg |
331 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5083910 |
gtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaaggtccatgttactaagattcaatgcatttactcttccatg |
5084009 |
T |
|
| Q |
332 |
atgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattactaagaatgtgataagggtctaaggta |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||||||| |
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| T |
5084010 |
atgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagaggaaattgaccaatttctaagcatatgataaggatctaaggta |
5084109 |
T |
|
| Q |
432 |
attgaggatttgaatgcaagaagtgcaaattca |
464 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
5084110 |
attgaggatttgaatgcaagaagtgaaaattca |
5084142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 132 - 464
Target Start/End: Original strand, 14427589 - 14427924
Alignment:
| Q |
132 |
ggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatagaaactattgc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
14427589 |
ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgc |
14427688 |
T |
|
| Q |
229 |
cttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaagattcaatgcatttactcttcc |
328 |
Q |
| |
|
| |||| ||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
14427689 |
catgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgcatttactcttcc |
14427788 |
T |
|
| Q |
329 |
atgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattactaagaatgtgataagggtctaag |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
14427789 |
atgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagcagaagtggaaattgaccaattactaagaatatgataaggatctaag |
14427888 |
T |
|
| Q |
429 |
gtaattgaggatttgaatgcaagaagtgcaaattca |
464 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14427889 |
gtaattgaggatttgaatgcaagaagtgaaaattca |
14427924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 283 - 464
Target Start/End: Complemental strand, 16872553 - 16872372
Alignment:
| Q |
283 |
taccttcaaggtccatgttattaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagt |
382 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| || | ||||||| |
|
|
| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatgctcatcacaagtgacaccaacccaattacatgatgaga---aagaagt |
16872457 |
T |
|
| Q |
383 |
agaagatgaaattgacca---attactaagaatgtgataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattca |
464 |
Q |
| |
|
|||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
16872456 |
agaagaggagattgaccaattattactaagcttgtgataagggtctaaggtaatagaggatttgaatgcaagaagtgaaaattca |
16872372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 131 - 291
Target Start/End: Complemental strand, 16873519 - 16873359
Alignment:
| Q |
131 |
aggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaactattgcct |
230 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || || | |||| ||||| || ||||||||||| ||||| |||||||||| ||||||||||||| |
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|
| T |
16873519 |
aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaactattgcct |
16873420 |
T |
|
| Q |
231 |
tgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaa |
291 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |
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|
| T |
16873419 |
tgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa |
16873359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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