View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5182_low_2 (Length: 351)
Name: NF5182_low_2
Description: NF5182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5182_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 27926375 - 27926051
Alignment:
| Q |
19 |
atatttcttcctatctctccttgttggtcgacaccaatacatgtcattacatttcaatgtttttgtgcaaattacctcggtgttatgccaatgtcttaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||| |||| ||||||| |
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| T |
27926375 |
atatttcttcctatctctccttgttggtcgacaccaatacatgtaattacatttcaatgtttctgtgcaaattgcatcggtgttatgtcaatttcttaat |
27926276 |
T |
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| Q |
119 |
aaatagtttgtggaattgaacaagtgactggcaacatgtatttgacatggaaggaaagggattttaatctgtgaaaaagactacaggtttatgatatatg |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27926275 |
aaatagtatgtggaattgaacaagtgactggcaacatgtatttgacatggaaggaaagggattttaacctgtgaaaaagagtacaggtttatgatatatg |
27926176 |
T |
|
| Q |
219 |
ttgtgaaatacttgcagataatgatatcgttttcctaccacattccctggggtcatatggagcaaattactcatcactatgataataacttatgacattt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27926175 |
ttgtgaaatacttgcagataatgatatcgttttcctaccacattccctggggtcatatggagcaaattactcatcactatgataataacctatgacattt |
27926076 |
T |
|
| Q |
319 |
acataatcttctctgtagtattatc |
343 |
Q |
| |
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||||||| |||| |||||||||||| |
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| T |
27926075 |
acataattttctgtgtagtattatc |
27926051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 28087545 - 28087699
Alignment:
| Q |
90 |
ttacctcggtgttatgccaatgtcttaataaatagtttgtggaattgaacaagtgactggcaacatgtatttgacatggaaggaaagggattttaatctg |
189 |
Q |
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||||||||||||| || ||| ||||||||||||| ||||||||||| ||||| || | | |||||||||||| ||||| ||||||||||||||||| |
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| T |
28087545 |
ttacctcggtgttgtgttgatgccttaataaatagtacgtggaattgaataagtgtttgacgatatgtatttgacacggaagaaaagggattttaatctg |
28087644 |
T |
|
| Q |
190 |
tgaaaaagactacaggtttatgatatatgttgtgaaatacttgcagataatgata |
244 |
Q |
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|||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
28087645 |
tgaaaaagactacaagtttatgatgtatgttgtgaaatatttgcagataatgata |
28087699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 13359128 - 13359177
Alignment:
| Q |
291 |
atcactatgataataacttatgacatttacataatcttctctgtagtatt |
340 |
Q |
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|||||||||| ||||| |||||||||||||||||| ||| ||||||||| |
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| T |
13359128 |
atcactatgagaataatttatgacatttacataattttcaatgtagtatt |
13359177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 28027595 - 28027638
Alignment:
| Q |
19 |
atatttcttcctatctctcc--ttgttggtcgacaccaatacat |
60 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28027595 |
atatgtcttcctatctctccatttgttggtcgacaccaatacat |
28027638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 1436150 - 1436424
Alignment:
| Q |
19 |
atatttcttcctatctctccttgttg---gtcgacaccaatacatgtcatta-catttcaatgtttt-tgtgcaaattacctcggtgttatgccaatgtc |
113 |
Q |
| |
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|||| ||||||||||||||| ||||| || |||||| | |||||| |||| ||||||||| ||| |||||| |||||||||||| | | ||| | |
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| T |
1436150 |
atatatcttcctatctctccatgttgtttgttgacaccgacacatgtgattaacatttcaatactttctgtgcatgttacctcggtgtcacgttgatgcc |
1436249 |
T |
|
| Q |
114 |
ttaataaatagtttgtggaattgaacaagtgactggcaacatgtatttgacatggaaggaaagggattttaatctgtgaaaaagactacaggtttatgat |
213 |
Q |
| |
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|||||||||| | |||||||||||||||||| || | | ||||| |||||| |||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
1436250 |
ttaataaataatgtgtggaattgaacaagtgcttgacgatatgtagttgacacagaagaaaagggattttaatctgtgtaaaagactatgagtttatgat |
1436349 |
T |
|
| Q |
214 |
atatgttgtgaaatacttgcagataatgatatcgttt-tcctaccacattccctggggtcatatggagcaaatta |
287 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||||||| |
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|
| T |
1436350 |
gtatgttgtgaaatatttgcagataatgataatgtttatcctaccaaattccttggggtcatcaggagcaaatta |
1436424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 17285605 - 17285654
Alignment:
| Q |
291 |
atcactatgataataacttatgacatttacataatcttctctgtagtatt |
340 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||| ||||||||| |
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|
| T |
17285605 |
atcactatgataataacttatgatatatacataactttctatgtagtatt |
17285654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 17298756 - 17298789
Alignment:
| Q |
291 |
atcactatgataataacttatgacatttacataa |
324 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
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|
| T |
17298756 |
atcactatgagaataacttatgacatttacataa |
17298789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 14983778 - 14983827
Alignment:
| Q |
291 |
atcactatgataataacttatgacatttacataatcttctctgtagtatt |
340 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| ||||||||| |
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| T |
14983778 |
atcactatgagaataacttatgacatttacataactttctatgtagtatt |
14983827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 9916633 - 9916682
Alignment:
| Q |
291 |
atcactatgataataacttatgacatttacataatcttctctgtagtatt |
340 |
Q |
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|||||||||| ||||| ||||||||||||||||| |||| ||||||||| |
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| T |
9916633 |
atcactatgagaataatttatgacatttacataactttctatgtagtatt |
9916682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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