View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5182_low_3 (Length: 243)
Name: NF5182_low_3
Description: NF5182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5182_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 29470913 - 29470749
Alignment:
| Q |
9 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctcctaaaatactctctaaaatggaaca |
108 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29470913 |
tatgtaaaagaaaagagtatagcaagtcctcttatagtaatgaggacaaaggacaatattttctctcaatatctcctaaaatactctctaaaatggaaca |
29470814 |
T |
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| Q |
109 |
agaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgtttgtaattggttttgtgat |
173 |
Q |
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| T |
29470813 |
agaattctcaccaaaaatacacttaagtgtatgttacaaagtgtgtttgtaattggttatgtgat |
29470749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 3072898 - 3073059
Alignment:
| Q |
9 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctcctaaaatactctctaaaatggaaca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
3072898 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctctcaatatctcctaaaatactctcgaaaatggaaca |
3072997 |
T |
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| Q |
109 |
agaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgtttgtaattggttttgt |
170 |
Q |
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| T |
3072998 |
agaattctcactaaaaatacactcaagtgtatgttacaaagtgtgtttgtaattggttttgt |
3073059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 3076427 - 3076587
Alignment:
| Q |
13 |
taaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctcctaaaatactctctaaaatggaacaagaa |
112 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3076427 |
taaaagaaaagagtacaacaagtcttcttatagtgatgaggacaaatgacaaaattttctctcaatatctcctaaaatactctctaaaatggaacaagaa |
3076526 |
T |
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| Q |
113 |
ttctcaccaaaaatacactcaagtgcatgttacaaagtgcgtttgtaattggttttgtgat |
173 |
Q |
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|||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
3076527 |
ttcttactaaaaatacactcaagtgtatgttacaaagtgtgtttgtaattggttttgtgat |
3076587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 8564954 - 8565113
Alignment:
| Q |
9 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctcctaaaatactctctaaaatggaaca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
8564954 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtgatgaggacaaaggataatattttcactcaatatttcctaaaatactctctaaaatggaaca |
8565053 |
T |
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| Q |
109 |
agaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgtttgtaattggtttt |
168 |
Q |
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||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
8565054 |
agaattctcacaaaaaatacacccaagtgtatgttacaaagtgtgtttgtaattggtttt |
8565113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 15114103 - 15113961
Alignment:
| Q |
9 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctcctaaaatactctctaaaatggaaca |
108 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
15114103 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaggacaatattttctcccaatatctcctaaaatactctctcaaatggaaca |
15114004 |
T |
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| Q |
109 |
agaattctcaccaaaaatacactcaagtgcatgttacaaagtg |
151 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
15114003 |
agaattctcaccaaaagtacactcaagtgtatgttacaaagtg |
15113961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 15241645 - 15241792
Alignment:
| Q |
9 |
tatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctcctaaaatactctctaaaatggaaca |
108 |
Q |
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|||||||||||||| ||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15241645 |
tatgtaaaagaaaaaagtacaataaatcctcttgtagtaatgaggacaaaggacaatattttctcttaatatctcctaaaatactctctaaaatggaaca |
15241744 |
T |
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| Q |
109 |
agaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgttt |
156 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
15241745 |
agaattctcacaaaaaatacactcaagtgtatgttacaaagtgtgttt |
15241792 |
T |
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