View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5183-Insertion-1 (Length: 898)

Name: NF5183-Insertion-1
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5183-Insertion-1
NF5183-Insertion-1
[»] chr7 (1 HSPs)
chr7 (8-898)||(5476669-5477576)
[»] chr4 (26 HSPs)
chr4 (82-587)||(8404435-8404936)
chr4 (619-898)||(8404121-8404397)
chr4 (461-580)||(43144070-43144189)
chr4 (82-171)||(8419456-8419545)
chr4 (374-587)||(8040929-8041139)
chr4 (632-853)||(8411213-8411429)
chr4 (16-163)||(43142322-43142471)
chr4 (762-898)||(8416771-8416904)
chr4 (763-855)||(9138481-9138571)
chr4 (632-830)||(8035755-8035948)
chr4 (83-163)||(8035332-8035412)
chr4 (632-890)||(8358919-8359171)
chr4 (477-587)||(9138213-9138323)
chr4 (82-163)||(8411809-8411890)
chr4 (517-581)||(8035655-8035719)
chr4 (436-552)||(8418920-8419035)
chr4 (622-674)||(43144219-43144271)
chr4 (763-830)||(8041297-8041362)
chr4 (468-587)||(8411465-8411584)
chr4 (82-163)||(8040757-8040838)
chr4 (82-125)||(8358276-8358319)
chr4 (371-418)||(9138129-9138176)
chr4 (632-674)||(8041169-8041211)
chr4 (530-587)||(8417070-8417127)
chr4 (385-418)||(8417226-8417259)
chr4 (632-669)||(9138353-9138390)
[»] chr2 (3 HSPs)
chr2 (632-855)||(33084363-33084581)
chr2 (371-587)||(33084611-33084824)
chr2 (82-163)||(33084975-33085056)


Alignment Details
Target: chr7 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 8 - 898
Target Start/End: Complemental strand, 5477576 - 5476669
Alignment:
Q  8 tgttcaccgtcaacgactctaatctaacaaagcgtggaggttgcaccttctttgaattgtcattttcagtaaaatcctgcacaattagagtgaataggaa 107  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5477576 tgttcaccgtcaacgactctaatctaacaaagcatggaggttccaccttctttgaattgtcatttacagtaaaatcctgcacaattagagtgaataggaa 5477477  T
Q  108 acattttcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaatataaacgaggaaacnnnnnnntatatataaatgagtgaacaatca 207  Q
    |||||||||||||||||||||||||||||||  ||||||||||  ||||| ||||||||||||||||||       ||||||||||||||||||||||||    
T  5477476 acattttcaaatggatattttgcgtgaatacggagatgttatg--cattataaatataaacgaggaaacaaaaaaatatatataaatgagtgaacaatca 5477379  T
Q  208 ttctagtcactgaatgtgtgaggcggtgtcacgataatatctaaatgtatgtaaacttcaa-taacgtccatgagcgactaatttgttggagatttcatt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||    
T  5477378 ttctagtcactgaatgtgtgaggcggtgtcacgataatatctaaatgtatgtaaactagaaataacgtccatgagcgactaagttgttggagatttcatt 5477279  T
Q  307 gatcaaactaacaaactggaaccagtttaactagcataaaacacttttgagaaccaagtcggttagcaaatgacagattcatagatgtttttgtaataca 406  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  5477278 gatcaaactaactaactggaaccagtttaattagcataaaacacttttgaggaccaagttgattagcaaatgacagattcatagatgtttttgtaataca 5477179  T
Q  407 ttcaaagactacacttggatcgtctaacatatttaaggacacaaatgattgttttaatcaaaataaagaagtgaaagtatactagagtgacttacatttt 506  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5477178 ttcaaagactacacttgcatcgtctaacatatttaaggacccaaatgattgttttaatcaaaataaagaagtgaaagtatactagagtgacttacattgt 5477079  T
Q  507 ctattgcttgaatgacagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaagaagactgaagatttcccattacc------ 600  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| || |          
T  5477078 ctattgcttgaatgatagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaagaagactgaagcttctccaatatcttcaga 5476979  T
Q  601 aagattccatgt---atacttgaagccatcaacgtttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttc 697  Q
    ||||||||||||   || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5476978 aagattccatgttgaattcttgaagccatcaatatttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttc 5476879  T
Q  698 aggatagtaaacgaacaaagatttggagtagaaagc------------aaaatttcatgagcaaaacatatgtgaaatatagtcaaattgggacagtgtc 785  Q
    | ||||||||||||||||||||||||||||||||||            |||| ||||| ||| |||||||| ||||||||||||||||| ||||||||||    
T  5476878 aagatagtaaacgaacaaagatttggagtagaaagcacaatttcattaaaaaattcatcagcgaaacatatatgaaatatagtcaaatt-ggacagtgtc 5476780  T
Q  786 tgattagatatgcagagggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaacggcatgaaggtttgaaaagggatcaacata 885  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5476779 tgattagatatgcaga-ggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaac-gcatgaaggtttgaaaagggatcaacata 5476682  T
Q  886 gtgatcgcgagtt 898  Q
    |||||||||||||    
T  5476681 gtgatcgcgagtt 5476669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 82 - 587
Target Start/End: Complemental strand, 8404936 - 8404435
Alignment:
Q  82 tcctgcacaattagagtgaataggaaacattttcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaa---tataaacgaggaaacnn 178  Q
    |||||||||||||||||||||| || ||||||||||||||||||  ||| |||||| | |||||||||||||||||||||   |||||||||||||||      
T  8404936 tcctgcacaattagagtgaatatgagacattttcaaatggatatcctgcatgaatatagagatgttatgaacattaaaaaaaatataaacgaggaaacaa 8404837  T
Q  179 nnnnntatatataaatgagtgaacaatcattctagtcactgaatgtgtgaggcggtgtcacgataatatctaaatgtatgtaaacttcaataacgtccat 278  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8404836 aaaaatatatataaatgagtgaacaatcattctagtcactgaatgtgtgaggcggtgtcacgataatatctaaatgtatggaaacttcaataacgtccat 8404737  T
Q  279 gagcgactaatttgttggagatttcattgatcaaactaacaaactggaaccagtttaactagcataaaacacttttgagaaccaagtcggttagcaaatg 378  Q
    ||| |||||||||||||| |||||||| ||||||||     ||||  ||||||||||| || |||||||||||||| || ||||||| | ||||||||||    
T  8404736 gagtgactaatttgttggtgatttcatagatcaaac-----aact--aaccagtttaattaacataaaacacttttcaggaccaagttgattagcaaatg 8404644  T
Q  379 acagattcatagatgtttttgtaatacattcaaagactacacttggatcgtctaacatatttaaggacacaaatgattgttttaatcaaaataaagaagt 478  Q
    ||||||||||| |||||||||||||||||||||||||||| ||   |||||||||||||||||||||| || |||||||||| |||||||||||||||||    
T  8404643 acagattcataaatgtttttgtaatacattcaaagactacgctgacatcgtctaacatatttaaggacccagatgattgtttaaatcaaaataaagaagt 8404544  T
Q  479 gaaagtatactagagtgacttacattttctattgcttgaatgacagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaaga 578  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8404543 gaaagtatactaaagtgacttacatagtctattgcttgaatgacagagtaaccaattttcaaaatctttacgttggcaagcacttgaagccaacttaaga 8404444  T
Q  579 agactgaag 587  Q
    |||||||||    
T  8404443 agactgaag 8404435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 619 - 898
Target Start/End: Complemental strand, 8404397 - 8404121
Alignment:
Q  619 gaagccatcaacgtttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttcaggatagtaaacgaacaaaga 718  Q
    |||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||| ||  | ||||||| || | |||  ||||||||| |||| ||||    
T  8404397 gaagccatcaatatttacttgttgaagaaaagaaagattgcttgtggaggataagagtttcttaaaaataggaattttccagatagtaaaagaactaaga 8404298  T
Q  719 tttggagtagaaagcaaaatttcatgagcaaaacatatgtgaaatatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctc 818  Q
    ||||||||||||||| ||| ||||| |||  |  |||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  8404297 tttggagtagaaagcgaaaattcatcagctgatgatatgtgaaatatagtcaaact-ggacagtgtctgattagatatgcaga-ggacttgtgcatcctc 8404200  T
Q  819 aatcaaataacaacacctgagcaccaaagtattcaacggcatgaaggtttgaaaagggatcaacatagtgatcgcgagtt 898  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  8404199 aatcaaatcacaaaacctgagcaccaaagtattcaac-gcatgaaggtttgaaaagggatcaacatagtgatcgtgagtt 8404121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 461 - 580
Target Start/End: Original strand, 43144070 - 43144189
Alignment:
Q  461 taatcaaaataaagaagtgaaagtatactagagtgacttacattttctattgcttgaatgacagagtaaccaattttcaaaatctttacgttcgcaagca 560  Q
    ||||||||||||||| ||||||||||| || ||| ||||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||| |||||||    
T  43144070 taatcaaaataaagaggtgaaagtatattaaagtaacttacattttgtattgtttgaatgagagaataaccaattttcaaaatctttacgttggcaagca 43144169  T
Q  561 cttgaagccaacttaagaag 580  Q
    |||| ||||| |||||||||    
T  43144170 cttgcagccatcttaagaag 43144189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 8419545 - 8419456
Alignment:
Q  82 tcctgcacaattagagtgaataggaaacattttcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaatataaacgag 171  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  8419545 tcctgcacaattatagtgaataggagacattttcaaattgatattttgcataaatacagagatgttatgaacattaaaaatataaacgag 8419456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 374 - 587
Target Start/End: Original strand, 8040929 - 8041139
Alignment:
Q  374 aaatgacagattcatagatgtttttgtaatacattcaaagactac--acttggatcgtctaacatatttaaggacacaaatgattgttttaatcaaaata 471  Q
    |||||||| ||||  | ||||||||||||||||||||||||||||  ||  ||||    ||||||||| |||||| |||||| |||| | ||||||||||    
T  8040929 aaatgacaaattcggatatgtttttgtaatacattcaaagactacttacacggat----taacatattcaaggacccaaatgtttgtgt-aatcaaaata 8041023  T
Q  472 aagaagtgaaagtatactagagtgacttacattttctattgcttgaatgacagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagccaa 571  Q
     ||| ||||||||| || | ||| || ||| |||| ||||| || ||||||||| ||  ||| | ||||||||||||| || || |||||||| |||||     
T  8041024 tagatgtgaaagtacacaacagtcacctaccttttgtattgtttcaatgacagaatagtcaaatctcaaaatctttacattggccagcacttgcagccat 8041123  T
Q  572 cttaagaagactgaag 587  Q
    |||||||||| |||||    
T  8041124 cttaagaagattgaag 8041139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 632 - 853
Target Start/End: Complemental strand, 8411429 - 8411213
Alignment:
Q  632 tttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttcaggatagtaaacgaacaaagatttggagtagaaa 731  Q
    ||||||||||||||||| |||||||||||||| |||| ||||| ||| | ||||| |  |||  |   ||||||||| |||| ||||| |||||||||||    
T  8411429 tttacttgttgaagaaaagaaagattgcatgtggaggccaagagttgatgaaaaaaataactactatcgatagtaaaagaactaagatatggagtagaaa 8411330  T
Q  732 gcaaaatttcatgagcaaaacatatgtgaaatatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctcaatcaaataacaa 831  Q
    || ||| ||  | ||| ||   ||  | |  |||||||||| ||| | | |||||||||||||||||||||| ||| ||||||| ||||||||| |||||    
T  8411329 gcgaaaattggtcagctaa---tacattacttatagtcaaactgg-ataatgtctgattagatatgcagagg-acttgtgcatcttcaatcaaagaacaa 8411235  T
Q  832 cacctgagcaccaaagtattca 853  Q
     |||||||||||||||| ||||    
T  8411234 tacctgagcaccaaagtcttca 8411213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 43142322 - 43142471
Alignment:
Q  16 gtcaacgactctaatctaacaaagcgtggaggttgcaccttctttgaattgtcattttcagtaaaatcctgcacaattagagtgaata--ggaaacattt 113  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||| |   |||| ||   |  ||||||||||||| ||| ||||  ||| ||||||    
T  43142322 gtcaatgactccaatctagcaaagtgtggaggttgcactttctttgaaataagatttgcaaggaggtcctgcacaattacagtaaatataggagacattt 43142421  T
Q  114 tcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaata 163  Q
    | |||| ||||||||||||||||||||| ||||||| ||||||| |||||    
T  43142422 ttaaattgatattttgcgtgaatacaaatatgttatcaacattacaaata 43142471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 762 - 898
Target Start/End: Complemental strand, 8416904 - 8416771
Alignment:
Q  762 atatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaacggcatg 861  Q
    ||||||||||||||| | | |||||||||||||||||||||| ||| ||||||||||||||||| ||||||  ||||  ||||||||||||| |  ||||    
T  8416904 atatagtcaaattgg-ataatgtctgattagatatgcagagg-acttgtgcatcctcaatcaaagaacaaccactgataaccaaagtattcagc-acatg 8416808  T
Q  862 aaggtttgaaaagggatcaacatagtgatcgcgagtt 898  Q
    |  |||||||||||| ||| || | |||||| |||||    
T  8416807 acagtttgaaaagggctcagcacaatgatcgtgagtt 8416771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 763 - 855
Target Start/End: Original strand, 9138481 - 9138571
Alignment:
Q  763 tatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaac 855  Q
    |||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||| |||||    |||| |||||||||||||||    
T  9138481 tatagtcaaattgg-atagtgtctgattagatatgcaga-ggacttgtgcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaac 9138571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 632 - 830
Target Start/End: Original strand, 8035755 - 8035948
Alignment:
Q  632 tttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttcaggatagtaaacgaacaaagatttggagtagaaa 731  Q
    ||||||||||||||||| |||||||||||||| ||||| |||| ||  | ||||||| |||  | |  ||||||||| |||| |||  ||||||||||||    
T  8035755 tttacttgttgaagaaaagaaagattgcatgtggaggataagagtttctgaaaaataggacaatgcccgatagtaaaagaactaagccttggagtagaaa 8035854  T
Q  732 gcaaaatttcatgagcaaa-acatatgtgaaatatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctcaatcaaataaca 830  Q
    || ||  ||  | ||| |  ||| |||    ||||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  8035855 gcgaatattgttcagctagtacagatg----atatagtcaaattgg-atagtgtctgattagatatgcaga-ggacttgtgcatcctcaatcaaagaaca 8035948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 8035332 - 8035412
Alignment:
Q  83 cctgcacaattagagtgaataggaaacattttcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaata 163  Q
    ||||||||||| || ||||||||| ||||| | ||||||||||||| | ||||| || ||||||||| |||||||||||||    
T  8035332 cctgcacaattcgaatgaataggagacattattaaatggatattttacatgaatgcagagatgttataaacattaaaaata 8035412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 632 - 890
Target Start/End: Original strand, 8358919 - 8359171
Alignment:
Q  632 tttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttcaggatagtaaacgaacaaagatttggagtagaaa 731  Q
    ||||||||||||||||| |||||||| ||||| ||||| |||| |||   |||||||  ||  | |  |||||||||  ||| |||||||||||||||||    
T  8358919 tttacttgttgaagaaaagaaagattacatgtggaggataagagttgccgaaaaatagcacactccgagatagtaaaaaaactaagatttggagtagaaa 8359018  T
Q  732 gcaaaatttcatgagcaaaacatatgtgaaatatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctcaatcaaataacaa 831  Q
    || ||| ||  | ||| ||   || ||   ||||||||||||||| | | |||||||||||||||||||| ||| | ||||||| ||||||||| |||||    
T  8359019 gcgaaaattggtcagctaa---tacgtaggatatagtcaaattgg-ataatgtctgattagatatgcaga-ggatttgtgcatcatcaatcaaagaacaa 8359113  T
Q  832 cacctgagcaccaaagtattcaacggcatgaaggtttgaaaagggatcaacatagtgat 890  Q
     || |||||  |||||| ||||||  |||||  |||||||||||| ||| || ||||||    
T  8359114 tacttgagctgcaaagtgttcaac-acatgacagtttgaaaaggggtcagcacagtgat 8359171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 587
Target Start/End: Original strand, 9138213 - 9138323
Alignment:
Q  477 gtgaaagtatactagagtgacttacattttctattgcttgaatgacagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaa 576  Q
    ||||||||| |||| ||||||||||||||| ||||   | || |||||  ||||||| || ||||||||| || || ||||||||||| ||||| |||||    
T  9138213 gtgaaagtacactaaagtgacttacattttgtattttctcaaagacagcataaccaaattccaaaatcttgacattggcaagcacttgcagccatcttaa 9138312  T
Q  577 gaagactgaag 587  Q
    ||||| |||||    
T  9138313 gaagattgaag 9138323  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 8411890 - 8411809
Alignment:
Q  82 tcctgcacaattagagtgaataggaaacattttcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaata 163  Q
    |||||||||||| || | ||||||| ||||| | |||||||| | || ||||||| || |||||||||||||||||||||||    
T  8411890 tcctgcacaatttgaataaataggatacattattaaatggatgtattacgtgaatgcagagatgttatgaacattaaaaata 8411809  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 581
Target Start/End: Original strand, 8035655 - 8035719
Alignment:
Q  517 aatgacagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaagaaga 581  Q
    ||||||||| || |||| ||||||||||||||| || ||||||||||| |||||| |||||||||    
T  8035655 aatgacagaatagccaaatttcaaaatctttacattggcaagcacttgcagccaatttaagaaga 8035719  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 552
Target Start/End: Complemental strand, 8419035 - 8418920
Alignment:
Q  436 tatttaaggacacaaatgattgttttaatcaaaataaagaagtgaaagtatactagagtgacttacattttctattgcttgaatgacagagtaaccaatt 535  Q
    ||||||| |||  |||||||||| | |||||||||| | | ||||||||| |||| ||| ||||||||||| ||||| |||||||| |   ||||||| |    
T  8419035 tatttaaagactaaaatgattgtgt-aatcaaaatatatatgtgaaagtacactaaagtcacttacattttttattgtttgaatgataccataaccaaat 8418937  T
Q  536 ttcaaaatctttacgtt 552  Q
    | |||||||||||||||    
T  8418936 tccaaaatctttacgtt 8418920  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 674
Target Start/End: Original strand, 43144219 - 43144271
Alignment:
Q  622 gccatcaacgtttacttgttgaagaaaggaaagattgcatgttgaggacaaga 674  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||| ||||    
T  43144219 gccatcaatatttacttgttgaagaaaagaaagattgcatgttgaggataaga 43144271  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 763 - 830
Target Start/End: Original strand, 8041297 - 8041362
Alignment:
Q  763 tatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctcaatcaaataaca 830  Q
    |||||||||||||| | | |||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  8041297 tatagtcaaattgg-ataatgtctgattagatatgcaga-ggacttgtgcatcctcaatcaaagaaca 8041362  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 468 - 587
Target Start/End: Complemental strand, 8411584 - 8411465
Alignment:
Q  468 aataaagaagtgaaagtatactagagtgacttacattttctattgcttgaatgacagagtaaccaattttcaaaatctttacgttcgcaagcacttgaag 567  Q
    |||| ||| ||||||||| |||| ||| |||||| | || ||||| ||||| ||||||    |||| ||||||||||||||| || ||||||||||| ||    
T  8411584 aatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcag 8411485  T
Q  568 ccaacttaagaagactgaag 587  Q
    ||| |||| ||||| |||||    
T  8411484 ccatcttacgaagattgaag 8411465  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 8040757 - 8040838
Alignment:
Q  82 tcctgcacaattagagtgaataggaaacattttcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaata 163  Q
    |||||||||||| || ||||||||| ||||| | | ||||||||||| ||||||| || | ||||||| |||||||| ||||    
T  8040757 tcctgcacaattcgaatgaataggagacattattatatggatattttacgtgaatgcagatatgttataaacattaagaata 8040838  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 8358276 - 8358319
Alignment:
Q  82 tcctgcacaattagagtgaataggaaacattttcaaatggatat 125  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||    
T  8358276 tcctgcacaattagagtgaattggagacatttttaaatggatat 8358319  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 9138129 - 9138176
Alignment:
Q  371 agcaaatgacagattcatagatgtttttgtaatacattcaaagactac 418  Q
    |||||||||||  |||| | ||||||||||||||||||||||||||||    
T  9138129 agcaaatgacaagttcagatatgtttttgtaatacattcaaagactac 9138176  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 632 - 674
Target Start/End: Original strand, 8041169 - 8041211
Alignment:
Q  632 tttacttgttgaagaaaggaaagattgcatgttgaggacaaga 674  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  8041169 tttacttgttgaagaaaagaaagattgcatgtggaggccaaga 8041211  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 587
Target Start/End: Complemental strand, 8417127 - 8417070
Alignment:
Q  530 ccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaagaagactgaag 587  Q
    |||| ||||||||||||||| || |||| |||||| ||||| |||||||||| |||||    
T  8417127 ccaactttcaaaatctttacattggcaaacacttgcagccatcttaagaagattgaag 8417070  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 8417259 - 8417226
Alignment:
Q  385 tcatagatgtttttgtaatacattcaaagactac 418  Q
    ||||| ||||||||||||||||||||||||||||    
T  8417259 tcatatatgtttttgtaatacattcaaagactac 8417226  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 669
Target Start/End: Original strand, 9138353 - 9138390
Alignment:
Q  632 tttacttgttgaagaaaggaaagattgcatgttgagga 669  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  9138353 tttacttgttgaagaaaagaaagattgcatgtggagga 9138390  T

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Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 632 - 855
Target Start/End: Complemental strand, 33084581 - 33084363
Alignment:
Q  632 tttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttcaggatagtaaacgaacaaagatttggagtagaaa 731  Q
    ||||||||||||||||| |||||||||||||| ||||| |||  ||  | ||||||| |||  | |  ||||||||| |||| |||||||||||||||||    
T  33084581 tttacttgttgaagaaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaa 33084482  T
Q  732 gcaaaatttcatgagcaaaacatatgtgaaatatagtcaaattgggacagtgtctgattagatatgcagagggactagtgcatcctcaatcaaataacaa 831  Q
    |  ||  ||  | ||   |   ||||| | ||||||||||||||| | |||||||||||||| ||| ||||| ||| ||||||||||||||||| |||||    
T  33084481 gtgaatattggtcagttga---tatgtaacatatagtcaaattgg-atagtgtctgattagacatgtagagg-acttgtgcatcctcaatcaaagaacaa 33084387  T
Q  832 cacctgagcaccaaagtattcaac 855  Q
    |  ||||| |||||||||||||||    
T  33084386 ccactgagaaccaaagtattcaac 33084363  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 371 - 587
Target Start/End: Complemental strand, 33084824 - 33084611
Alignment:
Q  371 agcaaatgacagattcatagatgtttttgtaatacattcaaagactacacttggatcgtctaacatatttaaggacacaaatgattgttttaatcaaaat 470  Q
    |||||||||||  |||| | |||||||||||||||| || ||||||||  |   | || |||||||||| || ||| ||||||||||| | |||||||||    
T  33084824 agcaaatgacaatttcagatatgtttttgtaatacaatcgaagactac--taacaccgactaacatattcaacgacccaaatgattgtgt-aatcaaaat 33084728  T
Q  471 aaagaagtgaaagtatactagagtgacttacattttctattgcttgaatgacagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagcca 570  Q
    | ||| | ||||||| |||| ||| ||||||||||| ||||   | ||||| ||| ||||||| || |||||||||||| || | ||||||||| |||||    
T  33084727 atagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacattggaaagcacttgcagcca 33084628  T
Q  571 acttaagaagactgaag 587  Q
     |||| ||||| |||||    
T  33084627 tcttaggaagattgaag 33084611  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 33085056 - 33084975
Alignment:
Q  82 tcctgcacaattagagtgaataggaaacattttcaaatggatattttgcgtgaatacaaagatgttatgaacattaaaaata 163  Q
    |||||||||||| || |||||| || ||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  33085056 tcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaata 33084975  T

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