View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5183-Insertion-2 (Length: 376)
Name: NF5183-Insertion-2
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183-Insertion-2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 40482459 - 40482826
Alignment:
| Q |
8 |
cttttccccttgtattctcaaccacttgtctatttttattgcactagaattgttggtgagttcattttcaaagtattataaatagagatgataagcatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482459 |
cttttccccttgtattctcaaccacttgtctatttttattgcactagaattgtttgtgagttcattttcaaagtattataaatagagatgataagcatgg |
40482558 |
T |
|
| Q |
108 |
tacatgtcatccaagaatcttgcacaacttacataccacctatgaagcactaacataaacacataataaccgataataatttaagaaaatacaagtgatt |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40482559 |
tacatgtcatccaagagtcttgcacaacttacataccacctatgaagcactaacataaacacataata-ccgataataatttaagaaaatacaagtgatt |
40482657 |
T |
|
| Q |
208 |
aaatgtgtggatatttgtgttggacactaatacgtatgagacacgtcttcactctaaagtctcggtgctatcaataatattagttagatgattagatggg |
307 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482658 |
aaatttgtggatattggtgttggacactaatacgtatgagacacgtcttcactctaaagtctcggtgctatcaataatattagttagatgattagatggg |
40482757 |
T |
|
| Q |
308 |
aagttatctttggtaacttagttgcacaagaattatcctattttactttctttttctttacatgttcac |
376 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482758 |
aagttatcttttgtaacttagttgcacaagaattatcctattttactttctttttctttacatgttcac |
40482826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 31652442 - 31652488
Alignment:
| Q |
167 |
cacataataaccgataataatttaagaaaatacaagtgattaaatgt |
213 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
31652442 |
cacatagtcaccgataataatttaagaaaatagaagtgattgaatgt |
31652488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 32931545 - 32931512
Alignment:
| Q |
178 |
cgataataatttaagaaaatacaagtgattaaat |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
32931545 |
cgataataatttaagaaaatagaagtgattaaat |
32931512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 31244018 - 31244050
Alignment:
| Q |
181 |
taataatttaagaaaatacaagtgattaaatgt |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
31244018 |
taataatttaagaaaatataagtgattaaatgt |
31244050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 13398353 - 13398385
Alignment:
| Q |
181 |
taataatttaagaaaatacaagtgattaaatgt |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
13398353 |
taataatttaagaaaatagaagtgattaaatgt |
13398385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University