View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183-Insertion-3 (Length: 348)
Name: NF5183-Insertion-3
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183-Insertion-3 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 8330815 - 8331155
Alignment:
| Q |
8 |
actactagaaccaaaaacattaacacataacacaagtgactgataaattcttccnnnnnnngtgcatgataattgaggaaagnnnnnnnntgaggcaaca |
107 |
Q |
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| T |
8330815 |
actactagaaccaaaaacattaacacataacacaagtgactgataaattcttccaaaaaaagtgcatgataattgatgaaagaaaaaaaatgaggcaaca |
8330914 |
T |
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| Q |
108 |
atattttaatcatacacaatttataaaatcctactatctaagtctcaatggcttctaatatcaaatatgaatggtctttataacaagtaacctttacaaa |
207 |
Q |
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| T |
8330915 |
atattttaatcatacacaatttataaaatcctactatctaagtctcaatggcttctaatatcaaatatgaatggtctttataacaagtatcctttacaaa |
8331014 |
T |
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| Q |
208 |
atctaatataaataatgctatattattgatgcaaattaaggaacttaattctatattactatactatagttgaatattttgagacttgcttgtgagcagg |
307 |
Q |
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| T |
8331015 |
atctaatataaattatgctatattattgatgcaaattaaggaacttaattctatattactaaactatagttgaatattttgagacttgcttgtgagcagg |
8331114 |
T |
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| Q |
308 |
atggagcaacatggtttctgaacagtccaaagcaaaacctg |
348 |
Q |
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| T |
8331115 |
atggagcaacatggtttctgaacagtccaaagcaaaacctg |
8331155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 8342208 - 8342279
Alignment:
| Q |
276 |
gttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacct |
347 |
Q |
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| T |
8342208 |
gttgaatattttgagtctttgttgtgtgcaggatggagcaacatggtttttgaacagtccaaagcaaaacct |
8342279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 8337761 - 8337833
Alignment:
| Q |
276 |
gttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacctg |
348 |
Q |
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| T |
8337761 |
gttgcatattttgagtctttgttgtgtgcaggatggagcaacatggtttttgaacagtccaaagcaaaacctg |
8337833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 6498 - 6569
Alignment:
| Q |
276 |
gttgaatattttgagacttgcttgtgagcaggatggagcaacatggtttctgaacagtccaaagcaaaacct |
347 |
Q |
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| T |
6498 |
gttgaatattttgagtctttgttgtgtgcaggatggagcaacatggtttctgaacagtccaaagcaaaacct |
6569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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