View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183-Insertion-4 (Length: 136)
Name: NF5183-Insertion-4
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 3e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 29449531 - 29449647
Alignment:
| Q |
20 |
atcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtgaaagaaaaggccaacagaa |
119 |
Q |
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| T |
29449531 |
atcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccgtggaattgtgaatggggatgacctttggtgaaagaaaaggccaatagaa |
29449630 |
T |
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| Q |
120 |
gtgtgacaaagatctca |
136 |
Q |
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| T |
29449631 |
gtgtgacaaagatctca |
29449647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 29462380 - 29462490
Alignment:
| Q |
25 |
acttctctcttgtgtaaaaatctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtg |
124 |
Q |
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| T |
29462380 |
acttctctctcgtgtaaaaatctcacatgaggggatccgtttccggtggaattatgaatggggatgacctatggtgaaag-aaaggcctacaaaagtgtg |
29462478 |
T |
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| Q |
125 |
acaaagatctca |
136 |
Q |
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| T |
29462479 |
acaaagatctca |
29462490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 9363554 - 9363451
Alignment:
| Q |
37 |
tgtaaaaatctcacacgaggggatccattccccatggaattg-----tgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtgacaaaga |
131 |
Q |
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| T |
9363554 |
tgtaaaaatctcacatgaggggatccattcccggtggaatcgaatcgtgaatggggatgacctatggtggaag-aaaggcctactgaagtgccacaaaga |
9363456 |
T |
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| Q |
132 |
tctca |
136 |
Q |
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| T |
9363455 |
tctca |
9363451 |
T |
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