View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5183-Insertion-8 (Length: 301)

Name: NF5183-Insertion-8
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5183-Insertion-8
NF5183-Insertion-8
[»] chr4 (23 HSPs)
chr4 (8-169)||(23408660-23408821)
chr4 (8-165)||(23868733-23868890)
chr4 (8-169)||(23402071-23402232)
chr4 (8-169)||(23453492-23453653)
chr4 (8-165)||(24307224-24307381)
chr4 (8-165)||(23415829-23415986)
chr4 (8-165)||(23885828-23885985)
chr4 (8-165)||(26832736-26832893)
chr4 (8-165)||(26434025-26434182)
chr4 (8-165)||(26435805-26435962)
chr4 (8-165)||(34662161-34662318)
chr4 (203-301)||(24307088-24307186)
chr4 (200-301)||(23401939-23402040)
chr4 (209-297)||(26832604-26832692)
chr4 (200-301)||(23408852-23408953)
chr4 (209-301)||(23868597-23868689)
chr4 (209-297)||(26433893-26433981)
chr4 (209-297)||(26435673-26435761)
chr4 (206-294)||(23453690-23453778)
chr4 (209-294)||(23885699-23885784)
chr4 (217-297)||(34662370-34662450)
chr4 (203-294)||(23416021-23416112)
chr4 (8-76)||(23451852-23451920)
[»] chr1 (4 HSPs)
chr1 (7-165)||(41670401-41670559)
chr1 (11-168)||(40795767-40795924)
chr1 (11-165)||(29391467-29391621)
chr1 (37-73)||(33216558-33216594)
[»] chr7 (2 HSPs)
chr7 (38-165)||(40180420-40180547)
chr7 (37-73)||(47317395-47317431)
[»] chr8 (1 HSPs)
chr8 (40-165)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 23408660 - 23408821
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  23408660 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgaga 23408759  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca 169  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23408760 taccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 23868890 - 23868733
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868890 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 23868791  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23868790 taccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 23402232 - 23402071
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  23402232 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgaga 23402133  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca 169  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  23402132 taccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 23453492 - 23453653
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  23453492 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgaga 23453591  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca 169  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  23453592 taccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 24307381 - 24307224
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307381 ggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 24307282  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  24307281 taccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 23415829 - 23415986
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  23415829 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgaga 23415928  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23415929 taccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 23885985 - 23885828
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  23885985 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgaga 23885886  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23885885 taccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 26832893 - 26832736
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26832893 ggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgaga 26832794  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26832793 taccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 26434182 - 26434025
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26434182 ggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgaga 26434083  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  26434082 taccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 26435962 - 26435805
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26435962 ggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgaga 26435863  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26435862 taccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 34662161 - 34662318
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgaga 107  Q
    ||||||||||| || |  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34662161 ggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgaga 34662260  T
Q  108 taccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||    
T  34662261 taccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 24307186 - 24307088
Alignment:
Q  203 gcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggt 301  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggt 24307088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 23402040 - 23401939
Alignment:
Q  200 cctgcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 299  Q
    ||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  23402040 cctgctgcagaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg 23401941  T
Q  300 gt 301  Q
    ||    
T  23401940 gt 23401939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 26832692 - 26832604
Alignment:
Q  209 gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 297  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26832692 gaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26832604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 23408852 - 23408953
Alignment:
Q  200 cctgcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 299  Q
    ||||| || |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  23408852 cctgctgcagaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg 23408951  T
Q  300 gt 301  Q
    ||    
T  23408952 gt 23408953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 23868689 - 23868597
Alignment:
Q  209 gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggt 301  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  23868689 gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggt 23868597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 26433981 - 26433893
Alignment:
Q  209 gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 297  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26433981 gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26433893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 26435761 - 26435673
Alignment:
Q  209 gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 297  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26435761 gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26435673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 23453690 - 23453778
Alignment:
Q  206 gcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 294  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23453690 gcggagccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctc 23453778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 23885784 - 23885699
Alignment:
Q  209 gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 294  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  23885784 gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctc 23885699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 34662370 - 34662450
Alignment:
Q  217 ttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 297  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34662370 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgc 34662450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 23416021 - 23416112
Alignment:
Q  203 gcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 294  Q
    ||||| |||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23416021 gcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctc 23416112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 23451852 - 23451920
Alignment:
Q  8 ggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaa 76  Q
    |||||||||||||| ||||||||||||||  |||||||||| |||||||| |||||||| |||||||||    
T  23451852 ggcttcttgttgtagcgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

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Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 41670559 - 41670401
Alignment:
Q  7 aggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgag 106  Q
    ||||||||||||||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||    
T  41670559 aggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgag 41670460  T
Q  107 ataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    ||||||||||| || ||||| || || ||||| ||||| |||||||||||||| |||||    
T  41670459 ataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 40795924 - 40795767
Alignment:
Q  11 ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac 110  Q
    ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| |    
T  40795924 ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattc 40795825  T
Q  111 caatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctac 168  Q
    ||||||| || ||||| || || ||||| ||||| |||||||||||||| ||||||||    
T  40795824 caatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 29391621 - 29391467
Alignment:
Q  11 ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac 110  Q
    ||||||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||    
T  29391621 ttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatac 29391522  T
Q  111 caatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 165  Q
    | || || || ||||| ||||| ||||| ||||| ||||| ||||| || |||||    
T  29391521 ctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  37 tgattcttgagcaagcttctcgaagatatcattgatg 73  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 40180420 - 40180547
Alignment:
Q  38 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaa 137  Q
    ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| ||||||||||    
T  40180420 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 40180519  T
Q  138 ctttgaatatgtagatcttgtatgtttc 165  Q
    | ||||| ||||| |||||||| |||||    
T  40180520 ccttgaagatgtatatcttgtaggtttc 40180547  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  37 tgattcttgagcaagcttctcgaagatatcattgatg 73  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
Q  40 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaact 139  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| |||||     
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  140 ttgaatatgtagatcttgtatgtttc 165  Q
    |||||||| || |||||||| |||||    
T  29684726 ttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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