View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_high_1 (Length: 813)
Name: NF5183_high_1
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-142; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 152 - 481
Target Start/End: Original strand, 38611715 - 38612044
Alignment:
| Q |
152 |
aaatgttttgctaatatccctaattgaagatgaactgtttgaatctgatttagaactccttgatgtagacccgtgaatttgataagagctaaaacaacca |
251 |
Q |
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| T |
38611715 |
aaatgttttgctaatatccctaattgatgatgaactgtttgaatctgatttagaactccttgatgtagacccgtgaatttgataagagctaaaacaacca |
38611814 |
T |
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| Q |
252 |
cttcagtccttcacctcaaaatctagcgtnnnnnnnnnnnnnnnnnnntggctgtggatatctcaatgtttttgtttccaataatttactcttaacttac |
351 |
Q |
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| T |
38611815 |
cttcagtccttcacctcaaaatctagcgtaacaacaacaacaacaaactggctgtggatatctcaatgtttttgtttccaataatttactcttaacttac |
38611914 |
T |
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| Q |
352 |
ttgtataataactatgcaggtcgggaataacatgtatttttgtaatcggaaggagaaggtcaacttttcatttcatgttcccctttcaatttcaaactaa |
451 |
Q |
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| T |
38611915 |
ttgtataataactatgcaggtggggaataccatgtatttttgtaatcggaaggagaaggtcaacttttcatttcatgctcccctttcaatttcaaactaa |
38612014 |
T |
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| Q |
452 |
tatatgtgtttttgcaataccatgtaagtg |
481 |
Q |
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| T |
38612015 |
tatatgtgtttttgcaataccatgtaagtg |
38612044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 647 - 798
Target Start/End: Original strand, 38613476 - 38613627
Alignment:
| Q |
647 |
taattcttactaaatatttcacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
746 |
Q |
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| T |
38613476 |
taattcttactaaatattccacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
38613575 |
T |
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| Q |
747 |
ttttatttatttttctatctcgtagcaagtttggccatcatcatcatctctg |
798 |
Q |
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| T |
38613576 |
ttttatttatttttctatctcgtaacaagtttggccatcatcatcttctctg |
38613627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 525 - 655
Target Start/End: Original strand, 38612088 - 38612218
Alignment:
| Q |
525 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtatttttcc |
624 |
Q |
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| T |
38612088 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtattttttc |
38612187 |
T |
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| Q |
625 |
tgtttagaaaatgatctgatgttaattctta |
655 |
Q |
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| T |
38612188 |
tgtttagaaaatgatctgatgttaattctta |
38612218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 38611493 - 38611569
Alignment:
| Q |
17 |
agtattaacttttaatgatgtgcttggccgatgaaaggtcaagaccacacaactttcaaacaggcagcatggcggac |
93 |
Q |
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| T |
38611493 |
agtattaacttttaatgatgtgcttggctgatgaaaggtcaagaccacacaactttcaaacaggcagcatggcggac |
38611569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 34722165 - 34722229
Alignment:
| Q |
156 |
gttttgctaatatccctaattgaagatgaactgtttgaatctgatttagaactccttgatgtaga |
220 |
Q |
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| T |
34722165 |
gttttgctaatatccctagttggtgatgaactgattgaatctgatttcgaactccctgatgtaga |
34722229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 34731457 - 34731519
Alignment:
| Q |
154 |
atgttttgctaatatccctaattgaagatgaactgtttgaatctgatttagaactccttgatg |
216 |
Q |
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| T |
34731457 |
atgttttgctattattcctatttaacgatgaactatttgaagctgattttgaactccttgatg |
34731519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 14667244 - 14667294
Alignment:
| Q |
551 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
601 |
Q |
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| T |
14667244 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
14667294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 1012494 - 1012544
Alignment:
| Q |
551 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
601 |
Q |
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| T |
1012494 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
1012544 |
T |
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