View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5183_high_18 (Length: 307)

Name: NF5183_high_18
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5183_high_18
NF5183_high_18
[»] chr2 (3 HSPs)
chr2 (32-283)||(37401868-37402119)
chr2 (32-66)||(18570996-18571030)
chr2 (34-66)||(34993983-34994015)
[»] chr5 (2 HSPs)
chr5 (103-231)||(42945256-42945393)
chr5 (250-283)||(42945392-42945425)
[»] scaffold0623 (2 HSPs)
scaffold0623 (153-202)||(5864-5913)
scaffold0623 (237-283)||(6112-6158)
[»] chr6 (2 HSPs)
chr6 (32-66)||(9024177-9024211)
chr6 (32-64)||(7942279-7942311)
[»] chr4 (3 HSPs)
chr4 (32-65)||(18513243-18513276)
chr4 (32-115)||(34589661-34589741)
chr4 (34-66)||(35723385-35723417)
[»] chr1 (1 HSPs)
chr1 (32-65)||(30847722-30847755)
[»] chr7 (3 HSPs)
chr7 (38-95)||(41811668-41811730)
chr7 (34-66)||(4909177-4909209)
chr7 (32-60)||(38134413-38134441)
[»] chr3 (2 HSPs)
chr3 (32-65)||(23144101-23144134)
chr3 (36-68)||(40150570-40150602)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 32 - 283
Target Start/End: Complemental strand, 37402119 - 37401868
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgataggtatccgacatcaagacacgcctaatccgaggtgtatctatagttcat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402119 tgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgataggtatccgacatcaagacacgcctaatccgaggtgtatctatagttcat 37402020  T
Q  132 aaaagattaaaataaaaaacacatagttaacctgtttattaaaagcttccattcccatatcagaactgcttctttgatcctgcaatcccatttcaatatc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402019 aaaagattaaaataaaaaacacatagttaacctgtttattaaaagcttccattcccatatcagaactgcttctttgatcctgcaatcccatttcaatatc 37401920  T
Q  232 accttgtctagaaggttgtccatgattagcctcactaacaaatgaatcctgc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37401919 accttgtctagaaggttgtccatgattagcctcactaacaaatgaatcctgc 37401868  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 18570996 - 18571030
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtgtc 66  Q
    |||||||||||||||||||||||||||||||||||    
T  18570996 tgacataattcaatgtaatcatatgtgtcagtgtc 18571030  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 34994015 - 34993983
Alignment:
Q  34 acataattcaatgtaatcatatgtgtcagtgtc 66  Q
    ||||||||||||||||| |||||||||||||||    
T  34994015 acataattcaatgtaattatatgtgtcagtgtc 34993983  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 42945256 - 42945393
Alignment:
Q  103 gcctaatccgaggtgtatctatagttcataaaagattaaaataaa---------aaacacatagttaacctgtttattaaaagcttccattcccatatca 193  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||         |||||||||||| |||| ||||||||||||||| ||||||||||||    
T  42945256 gcctaatccgaggtgtatctataattcataaaagattaaaattaactaagcagaaaacacatagttgacctttttattaaaagcttcaattcccatatca 42945355  T
Q  194 gaactgcttctttgatcctgcaatcccatttcaatatc 231  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42945356 gaactgcttctttgatcctgcaatcccatttcaatatc 42945393  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 42945392 - 42945425
Alignment:
Q  250 tccatgattagcctcactaacaaatgaatcctgc 283  Q
    ||||| ||||||||||||||||||||||||||||    
T  42945392 tccattattagcctcactaacaaatgaatcctgc 42945425  T

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Target: scaffold0623 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 5864 - 5913
Alignment:
Q  153 catagttaacctgtttattaaaagcttccattcccatatcagaactgctt 202  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  5864 catagttcacctgtttattaaaagtttccattcccatatcagaactgctt 5913  T

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Target: scaffold0623; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 6112 - 6158
Alignment:
Q  237 gtctagaaggttgtccatgattagcctcactaacaaatgaatcctgc 283  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||    
T  6112 gtcttgaaggttgtccattattagcctcactaacaaaagaatcctgc 6158  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 9024211 - 9024177
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtgtc 66  Q
    |||||||||||||||||||||||||||||||||||    
T  9024211 tgacataattcaatgtaatcatatgtgtcagtgtc 9024177  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 7942279 - 7942311
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtg 64  Q
    ||||||||||||||||||||| |||||||||||    
T  7942279 tgacataattcaatgtaatcacatgtgtcagtg 7942311  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 18513276 - 18513243
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtgt 65  Q
    ||||||||||||||||||||||||||||||||||    
T  18513276 tgacataattcaatgtaatcatatgtgtcagtgt 18513243  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 34589741 - 34589661
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgataggtatccgacatcaagacacgcctaatccgagg 115  Q
    ||||||||||||||||||||  ||||||| ||||| | ||| |||| |||| ||||| |||| | || ||||||||||||||||    
T  34589741 tgacataattcaatgtaatc--atgtgtc-gtgtcagtgtcggacacgatacgtatctgacaccgaggcacgcctaatccgagg 34589661  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 35723417 - 35723385
Alignment:
Q  34 acataattcaatgtaatcatatgtgtcagtgtc 66  Q
    ||||||||||||||||| |||||||||||||||    
T  35723417 acataattcaatgtaattatatgtgtcagtgtc 35723385  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 30847755 - 30847722
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtgt 65  Q
    ||||||||||||||||||||||||||||||||||    
T  30847755 tgacataattcaatgtaatcatatgtgtcagtgt 30847722  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 41811668 - 41811730
Alignment:
Q  38 aattcaatgtaatcatatgtgtcagtgtc-----tgcgtcagacatgataggtatccgacatc 95  Q
    |||||||||||||||||||||||||||||      | ||||||||||||| ||||||||||||    
T  41811668 aattcaatgtaatcatatgtgtcagtgtcgtgttggtgtcagacatgatatgtatccgacatc 41811730  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 4909177 - 4909209
Alignment:
Q  34 acataattcaatgtaatcatatgtgtcagtgtc 66  Q
    |||||||||| ||||||||||||||||||||||    
T  4909177 acataattcattgtaatcatatgtgtcagtgtc 4909209  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 38134441 - 38134413
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtc 60  Q
    |||||||||||||||||||||||||||||    
T  38134441 tgacataattcaatgtaatcatatgtgtc 38134413  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 23144134 - 23144101
Alignment:
Q  32 tgacataattcaatgtaatcatatgtgtcagtgt 65  Q
    |||||||||||||||||||||||||||| |||||    
T  23144134 tgacataattcaatgtaatcatatgtgttagtgt 23144101  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 40150602 - 40150570
Alignment:
Q  36 ataattcaatgtaatcatatgtgtcagtgtctg 68  Q
    ||||||||||||||||||||||||| |||||||    
T  40150602 ataattcaatgtaatcatatgtgtcggtgtctg 40150570  T

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