View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5183_high_2 (Length: 688)

Name: NF5183_high_2
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5183_high_2
NF5183_high_2
[»] chr2 (10 HSPs)
chr2 (25-682)||(31648213-31648870)
chr2 (58-527)||(31662740-31663195)
chr2 (338-663)||(31655254-31655577)
chr2 (56-309)||(31655576-31655839)
chr2 (68-206)||(41646127-41646265)
chr2 (78-206)||(7573521-7573648)
chr2 (78-206)||(16668116-16668243)
chr2 (68-206)||(29455905-29456042)
chr2 (68-206)||(43564694-43564832)
chr2 (77-146)||(5968310-5968378)
[»] chr4 (8 HSPs)
chr4 (68-206)||(53829930-53830068)
chr4 (68-206)||(21632197-21632335)
chr4 (68-206)||(21803473-21803611)
chr4 (68-206)||(5431285-5431423)
chr4 (77-206)||(20036820-20036949)
chr4 (78-206)||(2504430-2504557)
chr4 (82-206)||(34737246-34737370)
chr4 (78-206)||(46092883-46093010)
[»] chr7 (3 HSPs)
chr7 (68-206)||(47233247-47233385)
chr7 (78-206)||(25419005-25419132)
chr7 (68-206)||(44394240-44394378)
[»] chr1 (4 HSPs)
chr1 (68-206)||(39624017-39624155)
chr1 (78-206)||(13786814-13786941)
chr1 (78-206)||(25807201-25807328)
chr1 (68-166)||(22912075-22912171)
[»] scaffold0516 (2 HSPs)
scaffold0516 (68-206)||(3833-3971)
scaffold0516 (79-201)||(4065-4185)
[»] chr8 (5 HSPs)
chr8 (68-206)||(4138858-4138996)
chr8 (68-206)||(10186929-10187067)
chr8 (68-201)||(918414-918547)
chr8 (68-206)||(20172529-20172667)
chr8 (68-150)||(11427590-11427672)
[»] scaffold0084 (2 HSPs)
scaffold0084 (77-206)||(11468-11597)
scaffold0084 (79-169)||(13325-13417)
[»] chr6 (3 HSPs)
chr6 (78-206)||(13432883-13433010)
chr6 (68-201)||(18883132-18883266)
chr6 (68-206)||(16711541-16711678)
[»] chr3 (4 HSPs)
chr3 (78-206)||(52350311-52350438)
chr3 (68-206)||(26215887-26216025)
chr3 (68-206)||(48266833-48266971)
chr3 (68-206)||(35870921-35871057)
[»] chr5 (3 HSPs)
chr5 (78-206)||(36991626-36991753)
chr5 (78-206)||(37301349-37301477)
chr5 (68-206)||(21604556-21604693)


Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 25 - 682
Target Start/End: Complemental strand, 31648870 - 31648213
Alignment:
Q  25 cctttgaaacaagtccaatacttataggaacaaagtataaaacatggattatgattcttactttctcttgttcgacacttttggatttttggtgtttaga 124  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||     
T  31648870 ccttcgaaacaagtccaatacttataggaacaaagcataaaacatggattatgattcttactttctcttgttcgacactttcggatttttggtgttgagt 31648771  T
Q  125 gttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaattagttgaaaaggaaaaatctctaattgttacggggactgccacatcat 224  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||| |||  ||||  || ||| |||||||||    
T  31648770 gttttgagtttcttgtaagctccatccgaatcctcctccatcttatgacaattagttgaaaaagaaaaatctttaacagttataggaactaccacatcat 31648671  T
Q  225 tggactctataccattattcaaaagcaaaagtgtatttgtcaatgatttaagaacctcacgcacaagatcttcagcaacaatattaaagggtaacacgtt 324  Q
    |||| ||| | ||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||    
T  31648670 tggagtctttgccattgttcaacagcaaaagtgtgtttgtcaatgatttgagcacctcacgcacaagatcttcagcaacaatatttaagggtaacacttt 31648571  T
Q  325 tgatgattttgtgtttgaccctttaacttctttaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttata 424  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31648570 tgatgattttgtgtttgaccctttaacttctctaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttata 31648471  T
Q  425 agttcatcttccattgcctttttgccataatttgttggaagccaaagcatattctccattatatttttggtagtgtaaattaattaacaccttctataac 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31648470 agttcatcttccattgcctttttgccataatttgttggaagccaaagcatattctccattatatttttggtagtgtaaattaattaacaccttctataac 31648371  T
Q  525 tagtaattagctaggctaaataaggtattaatggatatgaagaggaaaaagagggatatggccttttattcaacttgataaccttcctacttgcaaattt 624  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31648370 tagtaactagctaggctaaataaggtattaatggatatgaagaggaaaaggagggatatggccttttattcaacttgttaaccttcctacttgcaaattt 31648271  T
Q  625 aaaaactgttcccatttggaagtatatagacaaaagttcctagtcaggttcatctcac 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31648270 aaaaactgttcccatttggaagtatatagacaaaagttcctagtcaggttcatttcac 31648213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 58 - 527
Target Start/End: Original strand, 31662740 - 31663195
Alignment:
Q  58 agtataaaacatggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcc 157  Q
    ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||| |||||| ||||||    
T  31662740 agtataagacatggattataaatcttactttctcttgttcgacccttttggatttttggtgttgagagtcttgagtttcttgcaagatccatcaaaatcc 31662839  T
Q  158 tcctccatcttaggaaaattagttgaaaaggaaaaatctctaattgttacggggactgccacatcattggactctataccattattcaaaagcaaaagtg 257  Q
    ||||| | |||     |||| ||||| || |||||||||||||| ||||  || |  |||||||||||||| ||| | |  |||||||| || |||||||    
T  31662840 tcctcaagcttgttgcaattcgttgagaaagaaaaatctctaatagttataggaagagccacatcattggagtctttgcagttattcaagagtaaaagtg 31662939  T
Q  258 tatttgtcaatgatttaagaacctcacgcacaagatcttcagcaacaatattaaagggtaacacgtttgatgattttgtgtttgaccctttaacttcttt 357  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||      | |||||||||||   |||||||||||  ||||||||||| ||||||      
T  31662940 tatttgtcaatgatttaagtacctcacgcacaagatctcctgcaa------ttaagggtaacactggtgatgattttgaatttgaccctttcacttct-- 31663031  T
Q  358 aatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttataagttcatcttccattgcctttttgccataattt 457  Q
     |||||||||||||||||| |||| | | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||   | ||||    
T  31663032 -atatttgacttatcatcataagtcagtgcctcaagtaattgatttgccatgtcacgtcctcttataagctcatcttccattgccttcttg---tcattt 31663127  T
Q  458 gttggaagccaaagcatattctccattatatttttggtagtgtaaattaattaacacctt-ctataactag 527  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||||||||||||| || ||||||||||    
T  31663128 gttggaagccaaagcagattctccatt---tttttggtagtgtaaattaattaacactttgctataactag 31663195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 338 - 663
Target Start/End: Complemental strand, 31655577 - 31655254
Alignment:
Q  338 tttgaccctttaacttctttaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttataagttcatcttcca 437  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  31655577 tttgaccctttaacttctctaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttattagctcttcttcca 31655478  T
Q  438 ttgcctttttgccataatttgttggaagccaaagcatattctccattatatttttggtag------tgtaaattaattaacacctt-ctataactagtaa 530  Q
    |||||||||| || |||||||| |||||| |||||  ||||||||| |||| ||  || |      ||||||||||| | ||  || |||||||||| ||    
T  31655477 ttgcctttttaccgtaatttgtaggaagcaaaagctgattctccatgatatcttctgttgtttatatgtaaattaatcatcaatttgctataactaggaa 31655378  T
Q  531 ttagctaggctaaataaggtattaatggatatgaagag-gaaaaagagggatatggccttttattcaacttgataaccttcctacttgcaaatttaaaaa 629  Q
     ||  |||| |||||||     | |||||||||||||| ||||||||||   | | |||||||||||||||| ||  ||||||||||||||||||||||     
T  31655377 cta--taggttaaataa-----tgatggatatgaagagagaaaaagaggtgcacgaccttttattcaacttggta--cttcctacttgcaaatttaaaat 31655287  T
Q  630 ctgttcccatttggaagtatatagacaaaagttc 663  Q
     || |||||||||| ||||| |||||||||||||    
T  31655286 ttgatcccatttgg-agtatttagacaaaagttc 31655254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 31655839 - 31655576
Alignment:
Q  56 aaagtataaaac-atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaa 154  Q
    |||||||||||| |||||| |  ||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||| |||  ||||||    
T  31655839 aaagtataaaaccatggataagaattcttactttctcttgttcgacccttttggatttttggtgttgagagtttcgaatttcttgtaacctctgtccaaa 31655740  T
Q  155 tcctcctccatcttaggaaaattagttgaaaaggaaaaatctctaattgt--tacg-------gggactgccacatcattggactctataccattattca 245  Q
    |||||||||||||| ||  |||| | |||||| ||||||||||| || ||  || |       || || |||| ||||||||||||| | ||||| ||||    
T  31655739 tcctcctccatctttgggcaattggatgaaaaagaaaaatctctgatagttgtaggagttgtaggaacagccatatcattggactctttgccattgttca 31655640  T
Q  246 aaagcaaaagtgtatttgtcaatgatttaagaacctcacgcacaagatcttcagcaacaatatt 309  Q
    | | |||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||    
T  31655639 acatcaaaagtgtatttgtcaatgatttgagcacctcaagcacaagatcttcagcaacaatatt 31655576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 41646127 - 41646265
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||    
T  41646127 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcgtccatct 41646226  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |||||||| |||| ||| ||||||||||||| ||||    
T  41646227 tatgaaaattaattgagaagaaaaaatctctaatagtta 41646265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 7573521 - 7573648
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  7573521 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 7573619  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  7573620 agttgagaaggaaaaatctctaatagtta 7573648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 16668116 - 16668243
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  16668116 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 16668214  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    || ||| ||||||||||||||||| ||||    
T  16668215 agctgagaaggaaaaatctctaatagtta 16668243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 29456042 - 29455905
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |    
T  29456042 atggataaagattcttactttatcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccat-t 29455944  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| ||||||||| ||||||| ||||    
T  29455943 tatggcaattagttgagaaggaaaaaactctaatagtta 29455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 43564832 - 43564694
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||| ||||||||||| |||| | |||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||||||    
T  43564832 atggataaagattcttactttatcttgttcgaccctttagaatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcatcctccatct 43564733  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||  |||||||||| |||||| ||||    
T  43564732 tatggcaattagttgggaaggaaaaatatctaatagtta 43564694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 5968310 - 5968378
Alignment:
Q  77 gattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctc 146  Q
    |||||||| ||||||||||||||| |||| ||||||||| |||| |||||||| ||||||||||||||||    
T  5968310 gattcttagtttctcttgttcgac-ctttaggatttttgatgttgagagttttaagtttcttgtaagctc 5968378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 53829930 - 53830068
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||    
T  53829930 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatct 53830029  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || | ||||||||||| ||||||||||||||||| ||||    
T  53830030 tatggaaattagttgagaaggaaaaatctctaatagtta 53830068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 21632197 - 21632335
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  21632197 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccatcctaatcctcctccatct 21632296  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| ||||||||||||||||| ||||    
T  21632297 tatggcaattagttgagaaggaaaaatctctaatagtta 21632335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 21803611 - 21803473
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  21803611 atggataaagattcttactttctcttgttcgaccctttaggaattttggtgttgagagttttgagtttcttgtaagatccatcctaatcctcctccatct 21803512  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| ||||||||||||||||| ||||    
T  21803511 tatggcaattagttgagaaggaaaaatctctaatagtta 21803473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 5431423 - 5431285
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||| ||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  5431423 atggataaagattcttagtttctcttgttcgaccctttaggatttttgatgttgagagttttgagtttcttgtaagctccatcaaaatcctcctccatct 5431324  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| |||||||||| |||||| ||||    
T  5431323 tatggcaattagttgagaaggaaaaatatctaatagtta 5431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 20036949 - 20036820
Alignment:
Q  77 gattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaat 176  Q
    ||||||||| || ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |  |||    
T  20036949 gattcttacgttatcttgttcgacccttttgaatttttggtgttgagagttttgagtttcttgtaagctccatccaaatccacctccttcttatggcaat 20036850  T
Q  177 tagttgaaaaggaaaaatctctaattgtta 206  Q
    ||||||| ||||||||||||||||| ||||    
T  20036849 tagttgagaaggaaaaatctctaatagtta 20036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 2504430 - 2504557
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  2504430 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 2504528  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  2504529 agttgagaaggaaaaatctctaatagtta 2504557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 34737246 - 34737370
Alignment:
Q  82 ttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaattagtt 181  Q
    ||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||||    
T  34737246 ttactttatcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccatccaaatcctccttcatcttatgacaattagtt 34737345  T
Q  182 gaaaaggaaaaatctctaattgtta 206  Q
    || || |||||||||||||| ||||    
T  34737346 gagaatgaaaaatctctaatagtta 34737370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 46093010 - 46092883
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||    ||||    
T  46093010 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttattgcaatt 46092912  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  46092911 agttgagaaggaaaaatctctaatagtta 46092883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 47233247 - 47233385
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||    
T  47233247 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagattcaaccaaatcctcctccatct 47233346  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || || |||||||||  ||||||||||||||||| ||||    
T  47233347 tatgacaattagttgtgaaggaaaaatctctaatagtta 47233385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 25419005 - 25419132
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  25419005 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 25419103  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  25419104 agttgagaaggaaaaatctctaatagtta 25419132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 44394378 - 44394240
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||| |||||||||||||||  ||| ||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  44394378 atggataaagattcttagtttctcttgttcgaccttttaggatttttgatgttgagagttttgagtttcttgtaagcttcatcaaaatcctcctccatct 44394279  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| |||||||||| |||||| ||||    
T  44394278 tatggcaattagttgagaaggaaaaatatctaatagtta 44394240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 39624155 - 39624017
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  39624155 atggataaagattcttactttcttttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccatccaaatcctcgtccatct 39624056  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| ||||||||||||||||| ||||    
T  39624055 tatggcaattagttgagaaggaaaaatctctaatagtta 39624017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 13786941 - 13786814
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  13786941 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 13786843  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  13786842 agttgagaaggaaaaatctctaatagtta 13786814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 25807201 - 25807328
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  25807201 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 25807299  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  25807300 agttgagaaggaaaaatctctaatagtta 25807328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 22912075 - 22912171
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatc 166  Q
    |||||| | |||||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||    
T  22912075 atggataaagattcttactttctcttgttcgaccctttataatttttggtgttgagagttttgagtttct--taagatccatccaaatcctcctccatc 22912171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 3971 - 3833
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  3971 atggataaagattcttactttttcttgttcgacccttttggatttttggtgttgagagttttgagtttcttgtcagctccatccaaatcttcctccatct 3872  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| |||||||| || ||||| ||||    
T  3871 tatggcaattagttgagaaggaaaagtccctaatagtta 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 4185 - 4065
Alignment:
Q  79 ttcttactttctcttgttcgacacttttggatttttggtgtttagagtttt-gagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||||| ||  ||||||||||||||||||| |||||||| ||||||   |||||||||||||||||| |||||||||||| |  ||||    
T  4185 ttcttactttctcttgtttgatccttttggatttttggtgttgagagtttttgagttt---gtaagctccatccaaatcttcctccatcttatggcaatt 4089  T
Q  178 agttgaaaaggaaaaatctctaat 201  Q
    |||||| |||||| ||||| ||||    
T  4088 agttgagaaggaagaatctttaat 4065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 4138996 - 4138858
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||||||||||||| |||| ||| |||||||||| ||| |||||||||||||||||| ||||||  |||||||||||||||    
T  4138996 atggataaagattcttactttctcttgttcgaccctttaggaattttggtgttgagatttttgagtttcttgtaagatccatctcaatcctcctccatct 4138897  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || || |||||||||| ||||||||||||||||| ||||    
T  4138896 tatgacaattagttgagaaggaaaaatctctaatagtta 4138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 10187067 - 10186929
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  10187067 atggataaagattcttactttctcttgttcgaccctttaggaattttggtgttgagagttttgagtttcttgtaagatccatcctaatcctcctccatct 10186968  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| |||| |||||||||||| ||||    
T  10186967 tatggcaattagttgagaagggaaaatctctaatagtta 10186929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 918414 - 918547
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||    
T  918414 atggataaagattcttaatttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctctatct 918513  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaat 201  Q
    || || ||||||| || |||||||||||||||||    
T  918514 tatgacaattagtcgagaaggaaaaatctctaat 918547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 20172667 - 20172529
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||| ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  20172667 atggataaagattcttagtttctcttgttcgaccctttaggatttttgatgttgagagttttgagtttcttgtaagcttcatcaaaatcctcctccatct 20172568  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| |||||||||| |||||| ||||    
T  20172567 tatggcaattagttgagaaggaaaaatatctaatagtta 20172529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 11427590 - 11427672
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatc 150  Q
    |||||| | |||||||| ||| ||||||||||| |||  ||||||||| |||| |||||||||||||||||||||||||||||    
T  11427590 atggataaagattcttagtttatcttgttcgacccttcaggatttttgatgttgagagttttgagtttcttgtaagctccatc 11427672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 11597 - 11468
Alignment:
Q  77 gattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaat 176  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||| |||||||||||| |  |||    
T  11597 gattcttactttctcttgttcgacccttttggatttttggtgttgagacttttaagtttcttgtcagctccatccaaatcttcctccatcttatgggaat 11498  T
Q  177 tagttgaaaaggaaaaatctctaattgtta 206  Q
    ||||||| ||||||||||| ||||| ||||    
T  11497 tagttgagaaggaaaaatccctaatagtta 11468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 13417 - 13325
Alignment:
Q  79 ttcttactttctcttgttcgacacttttggatttttggtgtttagag-ttttgag-tttcttgtaagctccatccaaatcctcctccatctta 169  Q
    |||||||||||||||||| ||  |||||||||||||| |||| |||| ||||||| ||| ||| || ||||||||||||| ||||||||||||    
T  13417 ttcttactttctcttgtttgatccttttggatttttgttgttgagagtttttgagtttttttgcaacctccatccaaatcttcctccatctta 13325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 9e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 13432883 - 13433010
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  13432883 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 13432981  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  13432982 agttgagaaggaaaaatctctaatagtta 13433010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 18883266 - 18883132
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttaga-gttttgagtttcttgtaagctccatccaaatcctcctccatc 166  Q
    |||||| | |||||||||||||| ||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  18883266 atggatgaagattcttactttcttttgttcgaccctttaggatttttggtgttgagaagttttgagtttcttgtaagatccatccaaatcctcgtccatc 18883167  T
Q  167 ttaggaaaattagttgaaaaggaaaaatctctaat 201  Q
    ||| |  |||||||||| |||||||||||||||||    
T  18883166 ttatggcaattagttgagaaggaaaaatctctaat 18883132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 16711541 - 16711678
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||| ||||||||||||||| |||| ||||||||| |||| ||||||| |||||| |||||||||||||||||||| | ||||||||    
T  16711541 atggataaagattcttagtttctcttgttcgacgctttaggatttttgatgttgagagtttcgagttt-ttgtaagctccatccaaatcttactccatct 16711639  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || || |||||||||| |||||||||| |||||| ||||    
T  16711640 tatgacaattagttgagaaggaaaaatatctaatagtta 16711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 52350438 - 52350311
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  52350438 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 52350340  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  52350339 agttgagaaggaaaaatctctaatagtta 52350311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 26216025 - 26215887
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||||||| |||||||||||||||  ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  26216025 atggataaagattcttagtttctcttgttcgaccatttaggatttttgatgttgagagttttgagtttcttgtaagctccatcaaaatcctcctccatct 26215926  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| |||||||||| |||||| ||||    
T  26215925 tatggcaattagttgagaaggaaaaatatctaatagtta 26215887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 48266971 - 48266833
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | |||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| || | |||||| |||||||||||    
T  48266971 atggataaagattattactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatcaaaccaaatgctcctccatct 48266872  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| ||||||||||||||||| ||||    
T  48266871 tatggcaattagttgagaaggaaaaatctctaatagtta 48266833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 35871057 - 35870921
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | ||||||||||||||||| |||||| |||| |||||||||||||| ||||||  |||||||||||||| |||| ||||||||||||||||||    
T  35871057 atggataaagattcttactttctcttattcgaccctttaggatttttggtgttgagagtt--gagtttcttgtaagatccaaccaaatcctcctccatct 35870960  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| ||||||||||||||||| ||||    
T  35870959 tatggcaattagttgagaaggaaaaatctctaatagtta 35870921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 36991753 - 36991626
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||| |  ||||    
T  36991753 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccttcttatggcaatt 36991655  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    |||||| ||||||||||||||||| ||||    
T  36991654 agttgagaaggaaaaatctctaatagtta 36991626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 37301349 - 37301477
Alignment:
Q  78 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 177  Q
    ||||||||||| |||| |||||| ||||  ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || ||||    
T  37301349 attcttactttatctttttcgaccctttctgatttttggtgttgagagttttgagtttcttgtaagatccatccaaatcctcctccatcttatgacaatt 37301448  T
Q  178 agttgaaaaggaaaaatctctaattgtta 206  Q
    || | | || |||||||||||||| ||||    
T  37301449 agctaagaatgaaaaatctctaatagtta 37301477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 21604556 - 21604693
Alignment:
Q  68 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 167  Q
    |||||| | ||||||||||||||||||||||||  |||  ||||||||||||| ||||||||||||||   ||||| |||  |||||||||||||||||     
T  21604556 atggataaagattcttactttctcttgttcgaccgtttaagatttttggtgttgagagttttgagttttgagtaagatcctaccaaatcctcctccatc- 21604654  T
Q  168 taggaaaattagttgaaaaggaaaaatctctaattgtta 206  Q
    || |  |||||||||| ||||||||||||||||| ||||    
T  21604655 tatggcaattagttgagaaggaaaaatctctaatagtta 21604693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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