View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_high_21 (Length: 275)
Name: NF5183_high_21
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 5238712 - 5238952
Alignment:
| Q |
17 |
agtaagtacaatctaaattcaaaaataatattaaagttgatctacgatttatttgggtaatcaattatcgtacaacttgaatcattctctagaaattcaa |
116 |
Q |
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| T |
5238712 |
agtaagtacaatctaaattcaaaaataatattaaagttgatctacggtttatt-gggtaatcaattatcgtacaacttgaatcatgctctagaatttcaa |
5238810 |
T |
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| Q |
117 |
tcttatcgaatcgtcctattttttacatagggtgtttatgtaaacagtcctgctatacagtggaaaatttgtcaaaaatattggctgatgtagtggaaaa |
216 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5238811 |
tcttatcaaatcgtcctattttttacagagggtgtttatgtaaacagtcctgctatacagtggaaaatttgtcaaaaatattggctgatgtagtggaaaa |
5238910 |
T |
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| Q |
217 |
tgtactgggaaagttaatataatattaatcatgccatagtgccttcat |
264 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
5238911 |
tgtactgggaaagttaaca------taatcatgccatagtgccttcat |
5238952 |
T |
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