View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_high_31 (Length: 228)
Name: NF5183_high_31
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 16701789 - 16701985
Alignment:
| Q |
25 |
gataaaaagctaattcttttgagacaagattcattacccttttgctctataattgattcaattttagtaataccctttataagctcaaggttgcttgagc |
124 |
Q |
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| T |
16701789 |
gataaaaagctaattcttttgagacaagattcattacccttttgctctataattgattcaattgtactaaaaccctttataagctcaaggttgcttgagc |
16701888 |
T |
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| Q |
125 |
tggattcactcnnnnnnngagaggcctctttaatttataaattctaatgcactttggtggatgtgacacgttgggaaaatagttatgtcctttgctt |
221 |
Q |
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| T |
16701889 |
tggattcactcaaaaaaagagaggcctctttaatttataaattctaatgcactttggtggatgtgacacgttgggaaaatagttatgtcctttgctt |
16701985 |
T |
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