View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5183_low_11 (Length: 435)

Name: NF5183_low_11
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5183_low_11
NF5183_low_11
[»] chr3 (32 HSPs)
chr3 (19-383)||(28500791-28501155)
chr3 (82-250)||(28475779-28475952)
chr3 (217-410)||(27905452-27905674)
chr3 (323-411)||(28475299-28475387)
chr3 (327-411)||(28140402-28140486)
chr3 (347-411)||(28127013-28127077)
chr3 (347-411)||(28516405-28516469)
chr3 (107-257)||(28076486-28076643)
chr3 (347-411)||(28140946-28141008)
chr3 (324-392)||(8540832-8540900)
chr3 (174-246)||(27995521-27995593)
chr3 (375-420)||(28504146-28504191)
chr3 (271-386)||(28476001-28476109)
chr3 (174-255)||(11405548-11405632)
chr3 (268-325)||(27995423-27995482)
chr3 (107-178)||(27995624-27995696)
chr3 (201-299)||(8542457-8542558)
chr3 (86-175)||(28044069-28044161)
chr3 (281-325)||(28140509-28140553)
chr3 (276-401)||(28076300-28076426)
chr3 (201-303)||(8540718-8540825)
chr3 (356-392)||(8542915-8542951)
chr3 (286-325)||(28155928-28155968)
chr3 (286-325)||(28174973-28175013)
chr3 (365-408)||(28126737-28126780)
chr3 (107-241)||(28175100-28175249)
chr3 (326-364)||(8542571-8542609)
chr3 (19-83)||(28156259-28156326)
chr3 (19-83)||(28175304-28175371)
chr3 (290-325)||(17752391-17752427)
chr3 (290-325)||(19053711-19053747)
chr3 (55-83)||(28475687-28475715)
[»] scaffold0067 (1 HSPs)
scaffold0067 (174-255)||(20719-20803)
[»] chr4 (1 HSPs)
chr4 (276-325)||(9392809-9392859)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 28500791 - 28501155
Alignment:
Q  19 ggaccttgcagagttacagcttattaagtaatcctttataatttacaaaatggtaaggctctcctagtacttcacaaaactttagacactttctaaaata 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28500791 ggaccttgcagagttacagcttattaaggaatcctttataatttacaaaatggtaaggctctcctagtacttcacaaaactttagacactttctaaaata 28500890  T
Q  119 ttgatgcttttgtaattaagtcggtatcaatccactgttattaccccttttttaatgcttatgatatttttgaggattttgccttggaattaggcttcaa 218  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28500891 ttgaggcttttgtaattaagtcggtatcaatccactgttatcaccccttttttaatgcttatgatatttttgaggattttgccttggaattaggcttcaa 28500990  T
Q  219 ggtttaagcttcagtttgaaaagtaaaattaaaatggctactatccaaatcaactcgagttggtttgtctaaaaaataatacaaagcataaaactcaagt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28500991 ggtttaagcttcagtttgaaaagtaaaattaaaatggctactatccatatcaactcgagttggtttgtctaaaagataatacaaagcataaaactcaagt 28501090  T
Q  319 tgatttaagaaatctagaacttggtcactgtaaacaattaattaaaatattgactgaaaattgtt 383  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28501091 tgatttaagaaatctacaacttggtcactgtaaacaattaattaaaatattgactgaaaattgtt 28501155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 28475779 - 28475952
Alignment:
Q  82 ctagtacttcacaaaactttagacactttctaaaatattgatgcttttgtaa-ttaagtcgg----tatcaatccactgttattaccccttttttaatgc 176  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |    ||||||||||||||||||||||||||||||||||    
T  28475779 ctagtacttcacaaaactttagacactttctaaaatattgaggcttttgtaacttaagtcagcatatatcaatccactgttattaccccttttttaatgc 28475878  T
Q  177 ttatgatatttttgaggattttgccttggaattaggcttcaaggtttaagcttcagtttgaaaagtaaaattaa 250  Q
    |||||||||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||    
T  28475879 ttatgatatttttgaggattttgccttggaatcaggcttcaagattcaagcttctgtttgaaaagtaaaattaa 28475952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 217 - 410
Target Start/End: Complemental strand, 27905674 - 27905452
Alignment:
Q  217 aaggtttaagcttcagtttgaaaagtaaaattaaaatggct--------actatccaaatcaactcgagttggtttgtctaaaaaataatacaaagcata 308  Q
    |||||||||||||||||||||||||||||||||| ||||||        |   | |  |||||||||||||||||||||||||| |||||||||||||||    
T  27905674 aaggtttaagcttcagtttgaaaagtaaaattaatatggctggagcaaaaaatttcttatcaactcgagttggtttgtctaaaagataatacaaagcata 27905575  T
Q  309 aaactcaagttgattta---------------------agaaatctagaacttggtcactgtaaacaattaattaaaatattgactgaaaattgttaaag 387  Q
    |||||||||||||||||                     | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27905574 aaactcaagttgatttataaacccttgtaatactcttaaaaaatctagaacttggtcactgtaaacaattaattaaaatatggactgaaaattgttaaag 27905475  T
Q  388 tatgattgtttgttggttacctt 410  Q
    |||||||||||||||||||||||    
T  27905474 tatgattgtttgttggttacctt 27905452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 323 - 411
Target Start/End: Original strand, 28475299 - 28475387
Alignment:
Q  323 ttaagaaatctagaacttggtcactgtaaacaattaattaaaatattgactgaaaattgttaaagtatgattgtttgttggttacctta 411  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  28475299 ttaagaaatctagaacttggtcactgtaaacaattaattaaagtatcgactgaaaattgttaaagtatgattgtttgttggttacctta 28475387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 327 - 411
Target Start/End: Complemental strand, 28140486 - 28140402
Alignment:
Q  327 gaaatctagaacttggtcactgtaaacaattaattaaaatattgactgaaaattgttaaagtatgattgtttgttggttacctta 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  28140486 gaaatctagaacttggtcactgtaaacaattaattaaaatatcgactgaaaattgttaaagcatgattgtttgttggttacctta 28140402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 28127077 - 28127013
Alignment:
Q  347 tgtaaacaattaattaaaatattgactgaaaattgttaaagtatgattgtttgttggttacctta 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28127077 tgtaaacaattaattaaaatattgactgaaaattgttaaagtatgattgtttgttggttacctta 28127013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 28516405 - 28516469
Alignment:
Q  347 tgtaaacaattaattaaaatattgactgaaaattgttaaagtatgattgtttgttggttacctta 411  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  28516405 tgtaaacaattaattaaaatatggactgaaaatcgttaaagtatgattgtttgttggttacctta 28516469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 28076643 - 28076486
Alignment:
Q  107 ctttctaaaatattgatgcttttgtaa-ttaagtcggtatcaatccactgttattaccccttttttaatgctt--------atgatatttttgaggattt 197  Q
    |||||||||||||||| | |||||||| ||||||||||||  ||||||||||||| ||||||||| |||||||        | || ||||||||||||||    
T  28076643 ctttctaaaatattgaagtttttgtaacttaagtcggtat--atccactgttatttcccctttttcaatgcttgaaattagaggacatttttgaggattt 28076546  T
Q  198 tgccttggaattaggcttcaaggtttaagcttcagtttgaaaagtaaaattaaaatggct 257  Q
    || |||||||  |||||||| | ||||||||| |||||||||||| ||||||| ||||||    
T  28076545 tgacttggaaacaggcttcaggttttaagctttagtttgaaaagttaaattaacatggct 28076486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 28141008 - 28140946
Alignment:
Q  347 tgtaaacaattaattaaaatattgactgaaaattgttaaagtatgattgtttgttggttacctta 411  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  28141008 tgtaaacaattaattaaaata--gactgaaaattgttaaagtatgattgtttgttggttacctta 28140946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 8540832 - 8540900
Alignment:
Q  324 taagaaatctagaacttggtcactgtaaacaattaattaaaatattgactgaaaattgttaaagtatga 392  Q
    |||||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  8540832 taagaaatataaaacttggtccctgtaaacaattaattaaaatatcgactgaaaattgttaaagtatga 8540900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 27995593 - 27995521
Alignment:
Q  174 tgcttatgatatttttgaggattttgccttggaattaggcttcaaggtttaagcttcagtttgaaaagtaaaa 246  Q
    |||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  27995593 tgcttatgatattttttaagattttgacttggaatcaggcttcaaggtttaagcttcagtttgaaaagcaaaa 27995521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 28504146 - 28504191
Alignment:
Q  375 aaaattgttaaagtatgattgtttgttggttaccttaccttatctc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28504146 aaaattgttaaagtatgattgtttgttggttaccttaccttatctc 28504191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 386
Target Start/End: Original strand, 28476001 - 28476109
Alignment:
Q  271 actcgagttggtttgtctaaaaaataatacaaa-gcataaaactcaagttgatttaagaaatctagaacttggtcactgtaaacaattaattaaaatatt 369  Q
    |||||||||||||| |||||||||||||||||| | |||| |||||        ||||||||||| ||||||||| || ||||||||||||||||||||     
T  28476001 actcgagttggtttctctaaaaaataatacaaaagaataatactca--------taagaaatctaaaacttggtccctctaaacaattaattaaaatatc 28476092  T
Q  370 gactgaaaattgttaaa 386  Q
    ||||  |||||||||||    
T  28476093 gactagaaattgttaaa 28476109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 11405632 - 11405548
Alignment:
Q  174 tgcttatgatatttttgaggattttgccttggaattaggcttcaaggtttaagc---ttcagtttgaaaagtaaaattaaaatgg 255  Q
    |||||||||||||||||||||||||| |||||||  ||| |||||| |||||||   || |||||||||||||||||||| ||||    
T  11405632 tgcttatgatatttttgaggattttgacttggaagcagggttcaagttttaagctaatttagtttgaaaagtaaaattaatatgg 11405548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 27995482 - 27995423
Alignment:
Q  268 tcaactcgagttggtttgtctaaaaaataata--caaagcataaaactcaagttgattta 325  Q
    ||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||||||||    
T  27995482 tcaactcgagttggtttctctaaaagataatatacaaagcataaaactcaagttgattta 27995423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 27995696 - 27995624
Alignment:
Q  107 ctttctaaaatattgatgcttttgtaa-ttaagtcggtatcaatccactgttattaccccttttttaatgctt 178  Q
    |||||||||||||||| | |||||||| ||||||| ||||||||||||||||||| ||| ||| |||||||||    
T  27995696 ctttctaaaatattgaggtttttgtaacttaagtcagtatcaatccactgttatttcccatttgttaatgctt 27995624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 8542457 - 8542558
Alignment:
Q  201 cttggaattaggcttcaaggtttaagcttcagtttgaaaagtaaaattaaaatg---gctactatccaaatcaactcgagttggtttgtctaaaaaataa 297  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||| |||   | | ||||||  ||  ||| |||||||||| ||||||||||||    
T  8542457 cttggaagcaggcttcaaggtttaagctttagtttgaaaagtaaaattaatatgtttgattctatccttattgactagagttggtttctctaaaaaataa 8542556  T
Q  298 ta 299  Q
    ||    
T  8542557 ta 8542558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 28044161 - 28044069
Alignment:
Q  86 tacttcacaaaactttagacac-tttctaaaatattgatgcttttgtaa-ttaagtc-ggtatcaatccactgttattaccccttttttaatg 175  Q
    ||||||||||||||||||| || ||| ||||||||||| | |||||||| ||||||| |||||||||||||||| ||  ||| ||||||||||    
T  28044161 tacttcacaaaactttagaaacttttgtaaaatattgaagtttttgtaacttaagtcaggtatcaatccactgtgatatccctttttttaatg 28044069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 28140553 - 28140509
Alignment:
Q  281 gtttgtctaaaaaataatacaaagcataaaactcaagttgattta 325  Q
    |||||||||||| |||||| |||||||||||||||||||||||||    
T  28140553 gtttgtctaaaagataatagaaagcataaaactcaagttgattta 28140509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 401
Target Start/End: Complemental strand, 28076426 - 28076300
Alignment:
Q  276 agttggtttgtctaaaaaataatac-aaagcataaaactcaagttgatttaagaaatctagaacttggtcact-gtaaacaattaattaaaatattgact 373  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||||||  ||  || | |  |  |||||  |||  ||||||| ||||||| ||||    
T  28076426 agttggtttttctaaaaaataatacaaaagcataaaagtcaagttgatttataaacccttgta-atactcactcttaagaaattaataaaaatatcgact 28076328  T
Q  374 gaaaattgttaaagtatgattgtttgtt 401  Q
    |||| |||||||||||||||||||||||    
T  28076327 gaaatttgttaaagtatgattgtttgtt 28076300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 8540718 - 8540825
Alignment:
Q  201 cttggaattaggcttcaaggtttaagcttcag--tttgaaaagtaaaattaaaatg---gctactatccaaatcaactcgagttggtttgtctaaaaaat 295  Q
    |||||||  |||||||||||||||||||| ||  |||||||||||||||||| |||   | | ||||||  ||  ||| |||||||||| ||||||||||    
T  8540718 cttggaagcaggcttcaaggtttaagctttagtttttgaaaagtaaaattaatatgtttgattctatccttattgactagagttggtttctctaaaaaat 8540817  T
Q  296 aatacaaa 303  Q
    ||||||||    
T  8540818 aatacaaa 8540825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 8542915 - 8542951
Alignment:
Q  356 ttaattaaaatattgactgaaaattgttaaagtatga 392  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8542915 ttaattaaaatatggactgaaaattgttaaagtatga 8542951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 28155968 - 28155928
Alignment:
Q  286 tctaaaaaataatacaaa-gcataaaactcaagttgattta 325  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  28155968 tctaaaaaataatacaaaagcataaaactcaagttgattta 28155928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 28175013 - 28174973
Alignment:
Q  286 tctaaaaaataatacaaa-gcataaaactcaagttgattta 325  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  28175013 tctaaaaaataatacaaaagcataaaactcaagttgattta 28174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 408
Target Start/End: Complemental strand, 28126780 - 28126737
Alignment:
Q  365 atattgactgaaaattgttaaagtatgattgtttgttggttacc 408  Q
    |||| |||||||||||||||||  ||||||||||||||||||||    
T  28126780 atatcgactgaaaattgttaaaacatgattgtttgttggttacc 28126737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 241
Target Start/End: Complemental strand, 28175249 - 28175100
Alignment:
Q  107 ctttctaaaatattgatgcttttgtaa-ttaagtc----ggtatcaatccactgttattacccctttttt-aatgctt--------atgatatttttgag 192  Q
    |||||||||||||||| | |||||||| |||||||     ||||||||||||||||||| |||||||||| |||||||        | || |||||||||    
T  28175249 ctttctaaaatattgaagtttttgtaacttaagtcagtatgtatcaatccactgttatttccccttttttcaatgcttgaaattagaggacatttttgag 28175150  T
Q  193 gattttgccttggaattaggcttcaaggtttaagct-tcagtttgaaaag 241  Q
    ||||||| |||||||  |||||||| | |||||||| | |||||||||||    
T  28175149 gattttgacttggaagcaggcttcaggttttaagctcttagtttgaaaag 28175100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 8542571 - 8542609
Alignment:
Q  326 agaaatctagaacttggtcactgtaaacaattaattaaa 364  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  8542571 agaaatctaaaacttggtccctgtaaacaattaattaaa 8542609  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 28156326 - 28156259
Alignment:
Q  19 ggaccttgcagagttacagcttattaagtaatccttt---ataatttacaaaatggtaaggctctcct 83  Q
    ||||||||||  ||| || |||||||| |||||||||   || |||||||||||||||||||||||||    
T  28156326 ggaccttgcattgttgcaacttattaaataatcctttcatatcatttacaaaatggtaaggctctcct 28156259  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 28175371 - 28175304
Alignment:
Q  19 ggaccttgcagagttacagcttattaagtaatccttt---ataatttacaaaatggtaaggctctcct 83  Q
    |||||||||  |||| || |||||||| |||||||||   || |||||||||||||||||||||||||    
T  28175371 ggaccttgcttagttgcaacttattaaataatcctttcatatcatttacaaaatggtaaggctctcct 28175304  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 17752391 - 17752427
Alignment:
Q  290 aaaaataataca-aagcataaaactcaagttgattta 325  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17752391 aaaaataatacagaagcataaaactcaagttgattta 17752427  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 19053711 - 19053747
Alignment:
Q  290 aaaaataataca-aagcataaaactcaagttgattta 325  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19053711 aaaaataatacagaagcataaaactcaagttgattta 19053747  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 28475687 - 28475715
Alignment:
Q  55 tataatttacaaaatggtaaggctctcct 83  Q
    |||||||||||||||||||||||||||||    
T  28475687 tataatttacaaaatggtaaggctctcct 28475715  T

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Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 20803 - 20719
Alignment:
Q  174 tgcttatgatatttttgaggattttgccttggaattaggcttcaaggtttaagc---ttcagtttgaaaagtaaaattaaaatgg 255  Q
    |||||||||||||||||||||||||| |||||||  ||| |||||| |||||||   || |||||||||||||||||||| ||||    
T  20803 tgcttatgatatttttgaggattttgacttggaagcagggttcaagttttaagctaatttagtttgaaaagtaaaattaatatgg 20719  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 9392809 - 9392859
Alignment:
Q  276 agttggtttgtctaaaaaataatacaaa-gcataaaactcaagttgattta 325  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  9392809 agttggtttctctaaaaaataatacaaaagcataaaactcaagttgattta 9392859  T

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