View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_12 (Length: 429)
Name: NF5183_low_12
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 32640756 - 32641155
Alignment:
| Q |
12 |
agagaaaaacaaatttgtaatgnnnnnnnnnntgtagtaacacctttgttaaaatatggatagatttggaatatatttggatgtagtccggctggttttg |
111 |
Q |
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| T |
32640756 |
agagaaaaacaaatttgtaatgaaaaaaaaaatgtagttacacctttgttaaaatatggatagatttggaatatatttggatgtagtccggctggttttg |
32640855 |
T |
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| Q |
112 |
tggaatggaagccatacatgccctcggatatcccaatagagacaaagaaattgtatccaaaaagtctctaatacaaattaatatattgacgatccggttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32640856 |
tggaatggaagccatacatgccctcggatatcccaatagagacaaagaaattgtatccaaaaagtctctaatacaaattaatatatttacgatccggttg |
32640955 |
T |
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| Q |
212 |
cacttcttcattgtaggggactcaaattaacactagttgacgacgttagttccacataacaatttgatcttgaaatttggttctcaatgataccctccct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640956 |
cacttcttcattgtaggggactcaaattaacactagttgacgacgttagttccacataacaatttgatcttgaaatttggttctcaatgataccctccct |
32641055 |
T |
|
| Q |
312 |
acgatcctcagagtgatcttattgagatcctgcaaacaacgtggtttggctagtgggtactgaagaaaaccgggctatagtttcaccctatctgcttcgt |
411 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32641056 |
acgatcctcaaagtgatcttattgagatcctgcaaacaacgtggtttggctagtcggtactgaagaaaaccgggctatagtttcaccctatctgcttcgt |
32641155 |
T |
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