View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_13 (Length: 418)
Name: NF5183_low_13
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 227 - 402
Target Start/End: Complemental strand, 29517285 - 29517109
Alignment:
| Q |
227 |
gttatttaaaatcttgattctaataaagttactaaccaa-atttgttgttttaatttttgttaatttgaaaattgcggggagctgcaacaacatgctatg |
325 |
Q |
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| T |
29517285 |
gttatttaaaatcttgattctaatcaagttacttaacaatatttgttgttttaatttttgttaatttgaaaattgcagggagctgcaacaacatgctatg |
29517186 |
T |
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| Q |
326 |
ttgctcttcatccaagcttgaaaggagtaactgggaagtactttttggattgtaatgagtttcaaccaagtgctttt |
402 |
Q |
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| T |
29517185 |
ttgctcttcatccaagcttgaaaggagtaactgggaagtactttttggattgtaatgagtttcaaccaagtgctttt |
29517109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 29517463 - 29517347
Alignment:
| Q |
101 |
gtctgagtctaacacaataatgcaatttcaaacagacttcttgaagatgttcacattttacatatggaagaatgtcccacaggtatttattttaattcct |
200 |
Q |
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| T |
29517463 |
gtctgagtctaacacaataatgcaatttcaaacagacttcttgaagatgttcacattttacatatggaagaatgtcccacaggtatttattttaattcct |
29517364 |
T |
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| Q |
201 |
ccttattctacaatgtt |
217 |
Q |
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| T |
29517363 |
ccttattctacaatgtt |
29517347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 29517555 - 29517497
Alignment:
| Q |
10 |
attattctcaaaaccgtacaaattattaacaacagttcaaacaaagaaatacagttaga |
68 |
Q |
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| T |
29517555 |
attattctcaaaaccgtacaaattattaacaacagttcaaacaaagaaatacagttaga |
29517497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 40103679 - 40103764
Alignment:
| Q |
298 |
ttgcggggagctgcaacaacatgctatgttgctcttcatccaagcttgaaaggagtaactgggaagtactttttggattgtaatga |
383 |
Q |
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| T |
40103679 |
ttgcagggagctgccacgacatgttatgttgcactccacccaagtgtaaaaggtgtaactgggaagtactttgtggattgcaatga |
40103764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 40103529 - 40103584
Alignment:
| Q |
133 |
cagacttcttgaagatgttcacattttacatatggaagaatgtcccacaggtattt |
188 |
Q |
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| T |
40103529 |
cagacttgttgaagatcttcagcttttacatatggaagaacgtcccacaggcattt |
40103584 |
T |
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