View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_14 (Length: 396)
Name: NF5183_low_14
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_14 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 35 - 378
Target Start/End: Complemental strand, 28739546 - 28739197
Alignment:
| Q |
35 |
aaactcttataatttcgtataaattatttgctccatctttaacacaagatttcgtataaattattttgctccatctttaacacaagaaacaatttgccag |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28739546 |
aaactcttataatttcgtataaattatttgctccatctttaacacaagatttcgtataaattattttgctccatctttaacacaagaaacaatttggcag |
28739447 |
T |
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| Q |
135 |
atcaatcttccagttgagacttttgaaacctcgacacttggtttatcaatttattaattaggggacta------tatatataattgtttattcattttta |
228 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28739446 |
atcaatcttccagttgagacttttgcaacctcgacacttggtttatcaatttattaattaggggactaattagatatatataattgtttattcattttta |
28739347 |
T |
|
| Q |
229 |
ggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagctttgactcaaggtttaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28739346 |
ggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagctttgactcaaggtttaa |
28739247 |
T |
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| Q |
329 |
ccaagttttcaatgttgccatggataatcatagccaaataatcatgagaa |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28739246 |
ccaagttttcaatgttgccatggataatcatagccaaatagtcatgagaa |
28739197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 28725389 - 28725267
Alignment:
| Q |
219 |
ttcatttttaggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagctttgact |
318 |
Q |
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|||||| |||||||| |||| ||||||||||||||||||||||||| ||| ||||||| |||||||| | |||| |||||||||||| || ||||||| |
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| T |
28725389 |
ttcattcttaggtcccagctcaataatgcaattcgagaagggggtattccattcaacatggttcatggcacacatgcctttgattatcctagttttgact |
28725290 |
T |
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| Q |
319 |
caaggtttaaccaagttttcaat |
341 |
Q |
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||||||| || |||||||||||| |
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| T |
28725289 |
caaggttcaatcaagttttcaat |
28725267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 341
Target Start/End: Complemental strand, 28699591 - 28699458
Alignment:
| Q |
208 |
ataattgtttattcatttttaggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatcc |
307 |
Q |
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|||||||||| |||||| ||||||| || ||||| ||||||||||||||||||||| || ||||||| |||||||| | |||| |||||||||| | |
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| T |
28699591 |
ataattgtttcttcattcttaggtctgaccttaagaatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttgattatgc |
28699492 |
T |
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| Q |
308 |
aagctttgactcaaggtttaaccaagttttcaat |
341 |
Q |
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||| ||||||||||||||||| |||||||||||| |
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| T |
28699491 |
aagttttgactcaaggtttaatcaagttttcaat |
28699458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 28643301 - 28643187
Alignment:
| Q |
227 |
taggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagctttgactcaaggttt |
326 |
Q |
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|||||| |||||||||||||||||||||||||||||| || ||||||| |||||||| | |||| |||| ||||||||||||| ||||||||||| |
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| T |
28643301 |
taggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttcattatccaagcttggactcaaggttc |
28643202 |
T |
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| Q |
327 |
aaccaagttttcaat |
341 |
Q |
| |
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||| ||||||||||| |
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| T |
28643201 |
aacaaagttttcaat |
28643187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 28652253 - 28652139
Alignment:
| Q |
227 |
taggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagctttgactcaaggttt |
326 |
Q |
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|||||| |||||||||||||||||||||||||||||| || ||||||| |||||||| | |||| |||| ||||||||||||| ||||||||||| |
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| T |
28652253 |
taggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttcattatccaagcttggactcaaggttc |
28652154 |
T |
|
| Q |
327 |
aaccaagttttcaat |
341 |
Q |
| |
|
||| ||||||||||| |
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| T |
28652153 |
aacaaagttttcaat |
28652139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 28710621 - 28710493
Alignment:
| Q |
213 |
tgtttattcatttttaggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagct |
312 |
Q |
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||||| |||||| ||||| | |||||||| ||| ||||||||||||||||| || ||||||| |||||||| | |||| ||||||||||||||||| |
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| T |
28710621 |
tgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacacatgcctttgattatccaagct |
28710522 |
T |
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| Q |
313 |
ttgactcaaggtttaaccaagttttcaat |
341 |
Q |
| |
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| ||||||||||| || ||||||||||| |
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| T |
28710521 |
tggactcaaggttctactaagttttcaat |
28710493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 28717968 - 28717840
Alignment:
| Q |
213 |
tgtttattcatttttaggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagct |
312 |
Q |
| |
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||||| |||||| ||||| | |||||||| ||| ||||||||||||||||| || ||||||| |||||||| | |||| ||||||||||||||||| |
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| T |
28717968 |
tgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacacatgcctttgattatccaagct |
28717869 |
T |
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| Q |
313 |
ttgactcaaggtttaaccaagttttcaat |
341 |
Q |
| |
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| ||||||||||| || ||||||||||| |
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| T |
28717868 |
tggactcaaggttctactaagttttcaat |
28717840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 28739777 - 28739737
Alignment:
| Q |
11 |
catcatcacccatattagtttttcaaactcttataatttcg |
51 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28739777 |
catcatcacccctattagtttttcaaactcttataatttcg |
28739737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 28625635 - 28625513
Alignment:
| Q |
219 |
ttcatttttaggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagctttgact |
318 |
Q |
| |
|
|||||| ||| ||||| |||||| |||||||||||| |||| ||| || ||||||| |||||||| | |||| |||| ||||| ||||||| || | |
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| T |
28625635 |
ttcattcttaagtccgggcttaagaatgcaattcgaaaaggcggtgtcccattcaacattgttcatggcacacatgcctttaattattcaagcttagatt |
28625536 |
T |
|
| Q |
319 |
caaggtttaaccaagttttcaat |
341 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
28625535 |
caaggtacaaccaagttttcaat |
28625513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 6476 - 6596
Alignment:
| Q |
221 |
catttttaggtccgagcttaataatgcaattcgagaagggggtactccgttcaacagagttcatgggagacatctctttgattatccaagctttgactca |
320 |
Q |
| |
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|||| ||||||| ||| |||||||||||||||||||||||||| || ||||||| |||||||| | |||| |||| ||||||||||||| |||||| |
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| T |
6476 |
cattcttaggtctgagtttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttcattatccaagcttggactca |
6575 |
T |
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| Q |
321 |
aggtttaaccaagttttcaat |
341 |
Q |
| |
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||||| ||| ||||||||||| |
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| T |
6576 |
aggttcaacaaagttttcaat |
6596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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