View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_15 (Length: 386)
Name: NF5183_low_15
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 33 - 366
Target Start/End: Complemental strand, 34240331 - 34239998
Alignment:
| Q |
33 |
agaacctgtgttggaagttgaaaaccacaattaacggtcccactccataggaagcagataagtagtaattgaaatgtgtgtgatgatttggtttgcaagg |
132 |
Q |
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| T |
34240331 |
agaacctgtgttggaagttgaaaaccacaattaacggtcccactccataggaagcagataagtagtaattgaaatgtgtgtgatgatttggtttgcaagg |
34240232 |
T |
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| Q |
133 |
aaaagctaaggcaatggccatggcatcagtaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaacactt |
232 |
Q |
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| T |
34240231 |
aaaagctaaggcaatggccatggcatcagcaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaacactt |
34240132 |
T |
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| Q |
233 |
attagcctccttaaacacaacaagaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaacca |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240131 |
attagcctccttaaacacaacaagaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaacca |
34240032 |
T |
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| Q |
333 |
gaagacgtaggttgagttgctcagcctcggcttc |
366 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34240031 |
gaagacgtaggttgagttgctcagcctcggcttc |
34239998 |
T |
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