View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5183_low_17 (Length: 361)

Name: NF5183_low_17
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5183_low_17
NF5183_low_17
[»] chr7 (4 HSPs)
chr7 (30-353)||(24613046-24613365)
chr7 (141-216)||(28749911-28749986)
chr7 (132-209)||(10980654-10980731)
chr7 (155-215)||(36034458-36034519)
[»] scaffold0024 (1 HSPs)
scaffold0024 (121-240)||(36212-36331)
[»] chr3 (6 HSPs)
chr3 (139-243)||(34809110-34809215)
chr3 (106-205)||(26502775-26502877)
chr3 (143-205)||(42890647-42890709)
chr3 (120-213)||(24924566-24924659)
chr3 (139-200)||(45745517-45745578)
chr3 (149-246)||(2910682-2910779)
[»] chr8 (4 HSPs)
chr8 (132-220)||(11517604-11517692)
chr8 (156-240)||(32967551-32967633)
chr8 (139-219)||(3490234-3490314)
chr8 (198-242)||(32472065-32472108)
[»] chr5 (7 HSPs)
chr5 (106-210)||(39074999-39075103)
chr5 (106-205)||(22732130-22732232)
chr5 (87-205)||(26362447-26362564)
chr5 (139-247)||(40555617-40555723)
chr5 (129-206)||(12298407-12298484)
chr5 (147-217)||(40197670-40197740)
chr5 (164-213)||(24514439-24514488)
[»] chr1 (10 HSPs)
chr1 (107-241)||(27858707-27858840)
chr1 (106-241)||(24084114-24084252)
chr1 (129-216)||(22315049-22315136)
chr1 (139-205)||(25113810-25113875)
chr1 (106-213)||(14321030-14321140)
chr1 (129-216)||(30640215-30640302)
chr1 (106-199)||(35838330-35838425)
chr1 (111-213)||(26663106-26663210)
chr1 (156-216)||(15646123-15646183)
chr1 (132-200)||(44107703-44107771)
[»] chr6 (5 HSPs)
chr6 (129-208)||(10424676-10424755)
chr6 (141-213)||(27133915-27133987)
chr6 (87-242)||(31247660-31247816)
chr6 (106-200)||(9062861-9062958)
chr6 (132-242)||(31238290-31238400)
[»] chr2 (8 HSPs)
chr2 (139-218)||(43470481-43470560)
chr2 (139-219)||(32809987-32810068)
chr2 (149-240)||(17563516-17563607)
chr2 (106-216)||(37807232-37807345)
chr2 (139-216)||(37985142-37985219)
chr2 (62-239)||(38778729-38778907)
chr2 (129-242)||(45475185-45475297)
chr2 (190-218)||(31776069-31776097)
[»] chr4 (12 HSPs)
chr4 (132-213)||(52708531-52708612)
chr4 (83-205)||(43134445-43134564)
chr4 (132-215)||(32004408-32004491)
chr4 (179-239)||(29588566-29588628)
chr4 (106-199)||(46737258-46737354)
chr4 (106-200)||(779746-779844)
chr4 (139-216)||(26784769-26784846)
chr4 (106-241)||(55292291-55292429)
chr4 (129-243)||(16467882-16467995)
chr4 (147-216)||(27924034-27924103)
chr4 (132-213)||(38179832-38179913)
chr4 (147-215)||(35803556-35803624)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 24613365 - 24613046
Alignment:
Q  30 aacctaagtgagttttcatataaaatacatgtgtcatgctaactactatcctagaggcactaattaagaaagtgtaaaaaatagaaattcttcattaaaa 129  Q
    |||||||| ||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||    
T  24613365 aacctaagcgagttttcatataaaata---gtgtcatgctaactactatcctagaggtactaattaagaaagtgttaaaaatagaaaattttcattaaaa 24613269  T
Q  130 ataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacact 229  Q
    | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||    
T  24613268 acaactttttgactttcataaagttgaacattctacttttcactaattctcaatgcaaaatttctatattagttttcttaactagtatcctcgagacact 24613169  T
Q  230 agttagcatttcccaaaatgtatttagtaccgtaggtcgattgtgatcttcatcatcaatcaaatgcctacaattatcttaaagcataatcaccttatta 329  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24613168 agttagcatttcccaaaatatatttagtaccgtggatcgattgtgatcttcatcatcaatcaaatgcctacaattatcttaaa-cataatcaccttatta 24613070  T
Q  330 tgtcttcacctagtgatattcttc 353  Q
    ||||||||||||||||||||||||    
T  24613069 tgtcttcacctagtgatattcttc 24613046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 28749986 - 28749911
Alignment:
Q  141 actttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtg 216  Q
    |||||||||||||| |||||||||||||| |  ||||  ||||||| ||||||||||||| | |||||||||||||    
T  28749986 actttcataaagttaaacattctacttttcatcaatttccaatgcataatttctatattaatcttcttaactagtg 28749911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 10980731 - 10980654
Alignment:
Q  132 aactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttctta 209  Q
    |||||| | ||||| |||||||| |||||||||||||| ||||||| ||||| || ||||| ||||||| | ||||||    
T  10980731 aactttttaacttttataaagttaaacattctacttttcactaattttcaatacataatttatatattaatcttctta 10980654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 36034519 - 36034458
Alignment:
Q  155 gaacattctactttttactaattctcaatgcaaaatttctatattag-ttttcttaactagt 215  Q
    |||||||||||||||||  | || |||||||||| |||||||||||| ||||||||||||||    
T  36034519 gaacattctactttttatcacttttcaatgcaaagtttctatattagtttttcttaactagt 36034458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 36331 - 36212
Alignment:
Q  121 tcattaaaaataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcct 220  Q
    ||||||||||||||||| |||||||||||||||| ||||||| | |||| ||  |||  ||||||| |||||||||| |||| ||||||||||||| |||    
T  36331 tcattaaaaataactttttgactttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtcttcttaactagtgccct 36232  T
Q  221 cggaacactagttagcattt 240  Q
      | ||||||||||||||||    
T  36231 aaggacactagttagcattt 36212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 34809215 - 34809110
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagtttt-cttaactagtgtcctcggaacactagttagca 237  Q
    |||||||||||||||| |||||||||||||| || | ||||||||||||| |||||||||||||||| ||||||||||| ||| ||  ||||| ||| ||    
T  34809215 tgactttcataaagttaaacattctacttttcaccatttctcaatgcaaagtttctatattagttttccttaactagtgcccttggggcactacttaaca 34809116  T
Q  238 tttccc 243  Q
    ||||||    
T  34809115 tttccc 34809110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 26502877 - 26502775
Alignment:
Q  106 aaaaatagaaattcttcattaaa---aataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagt 202  Q
    ||||||||||||| ||||| |||   || |||||| ||||||| | |||||||||||||||||||||  | | ||||||||||||| ||| |||||||||    
T  26502877 aaaaatagaaatttttcataaaacacaacaactttttgacttttaaaaagttgaacattctacttttcgccacttctcaatgcaaagtttatatattagt 26502778  T
Q  203 ttt 205  Q
    |||    
T  26502777 ttt 26502775  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 42890709 - 42890647
Alignment:
Q  143 tttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagtttt 205  Q
    ||||||||||||||||||||||||||| |  | |||  |||||||| ||||||||||||||||    
T  42890709 tttcataaagttgaacattctacttttcagcacttcctaatgcaaagtttctatattagtttt 42890647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 24924566 - 24924659
Alignment:
Q  120 ttcattaaaaataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaacta 213  Q
    ||||||||||  ||| || | |||||||||||| | |||||| ||||||| || |||| | |||||| ||||||||||||| | ||||||||||    
T  24924566 ttcattaaaatcaacgttttaactttcataaagctaaacattatacttttcaccaatttttaatgcataatttctatattaatcttcttaacta 24924659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 45745578 - 45745517
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatatta 200  Q
    |||||||||||||||| ||||||| | ||||||  |||| |||||||| |||||||||||||    
T  45745578 tgactttcataaagttaaacattccattttttatcaattttcaatgcataatttctatatta 45745517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 2910779 - 2910682
Alignment:
Q  149 aaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacactagttagcatttcccaaa 246  Q
    ||||||||||||   ||||||||  |||| |||||||||| ||| | ||||||| | ||||||||||| ||| ||| ||| ||||| |||| ||||||    
T  2910779 aaagttgaacatagcactttttaacaattttcaatgcaaactttttttattagtctccttaactagtgccctgggagcaccagttaacattacccaaa 2910682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 11517604 - 11517692
Alignment:
Q  132 aactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcct 220  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||||  ||||||| ||||| ||||||| ||||||||| |||||||||    
T  11517604 aactttttgactttcataaagttaaacattctactttttaccaatttccaatgcataatttttatattaattttcttaattagtgtcct 11517692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 32967551 - 32967633
Alignment:
Q  156 aacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacactagttagcattt 240  Q
    ||||||| |||||| ||||  | | ||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||    
T  32967551 aacattcaacttttcactacattttaatgcaaaatttctatattagttttctcagctagtgtcct-ggaacact-gttagcattt 32967633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 3490234 - 3490314
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcc 219  Q
    ||||||| | |||||| ||||| | ||||||||  |||| ||||||||||||| ||| || | |||||||| |||||||||    
T  3490234 tgacttttaaaaagttaaacataccactttttaacaattttcaatgcaaaattcctaaataaattttcttatctagtgtcc 3490314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 32472108 - 32472065
Alignment:
Q  198 ttagttttcttaactagtgtcctcggaacactagttagcatttcc 242  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||    
T  32472108 ttagtttccttaactagtgtccttgg-acactagttagcatttcc 32472065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 39075103 - 39074999
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagtttt 205  Q
    ||||||||||| | ||||||||||| |||||| ||||||| |||||||| ||||||| || |||||  |||| |||||||| ||||||||||||| | ||    
T  39075103 aaaaatagaaaattttcattaaaaacaactttttgacttttataaagttaaacattccaccttttatcaattttcaatgcataatttctatattaatctt 39075004  T
Q  206 cttaa 210  Q
    |||||    
T  39075003 cttaa 39074999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 22732130 - 22732232
Alignment:
Q  106 aaaaatagaaattcttcattaaaaa---taactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagt 202  Q
    |||||||| |||| |||||||||||   ||| ||| ||| ||||||||||||||| ||||||||||| || | || ||||||||||| ||||||||||||    
T  22732130 aaaaataggaatttttcattaaaaacaataattttttgaatttcataaagttgaatattctacttttcaccacttttcaatgcaaaacttctatattagt 22732229  T
Q  203 ttt 205  Q
    |||    
T  22732230 ttt 22732232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 26362564 - 26362447
Alignment:
Q  87 cactaattaagaaagtgtaaaaaatagaaattcttcattaaaa--ataactttctgactttcataaagttgaacattctactttttactaattctcaatg 184  Q
    ||||||||||| ||||   |||||||| |||| ||||| ||||  | |||||| ||||||||||||||||||| ||| ||||||| || | ||| |||||    
T  26362564 cactaattaaggaagt---aaaaatagtaatttttcataaaaacaacaactttttgactttcataaagttgaatattttacttttcaccacttcccaatg 26362468  T
Q  185 caaaatttctatattagtttt 205  Q
     ||||||| ||||||||||||    
T  26362467 taaaatttttatattagtttt 26362447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 40555617 - 40555723
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacactagttagcat 238  Q
    ||||||| | |||||||||||| | | ||||||  |||||||||||||||||||||| |||||| | |||| ||||||  | ||| |||||||||| |||    
T  40555617 tgacttttaaaaagttgaacatacaattttttaacaattctcaatgcaaaatttctaaattagtctacttatctagtg--cccgggacactagttaacat 40555714  T
Q  239 ttcccaaaa 247  Q
    | |||||||    
T  40555715 tacccaaaa 40555723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 12298484 - 12298407
Alignment:
Q  129 aataactttctgactttcataaagttgaacattctactttttactaattctc-aatgcaaaatttctatattagttttc 206  Q
    ||||||||| |||||||||||||||||||||||||||| || || |||| || ||| |||| |||||||||| ||||||    
T  12298484 aataactttttgactttcataaagttgaacattctactcttcac-aattttctaatacaaagtttctatattggttttc 12298407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 40197670 - 40197740
Alignment:
Q  147 ataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgt 217  Q
    ||||| || ||||||| |||||| |||||||  ||||||| ||||||||||||| | ||||||||||||||    
T  40197670 ataaaattaaacattccacttttcactaatttccaatgcataatttctatattaatcttcttaactagtgt 40197740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 24514439 - 24514488
Alignment:
Q  164 actttttactaattctcaatgcaaaatttctatattagttttcttaacta 213  Q
    ||||||||  |||| |||||||||||||||||||||||| | ||||||||    
T  24514439 actttttaacaattttcaatgcaaaatttctatattagtatccttaacta 24514488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 241
Target Start/End: Original strand, 27858707 - 27858840
Alignment:
Q  107 aaaatagaaattcttcattaaaaataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttc 206  Q
    |||||||||||| || |||||||| || ||| ||||||||||||| || ||||||| |||||| || |||| |||| ||| ||||| ||||||| | |||    
T  27858707 aaaatagaaattttttattaaaaacaattttttgactttcataaacttaaacattcaacttttcaccaattttcaacgcataatttttatattaatcttc 27858806  T
Q  207 ttaactagtgtcctcggaacactagttagcatttc 241  Q
    |||| ||||| ||| ||  ||||||||||||||||    
T  27858807 ttaattagtgccctagg-gcactagttagcatttc 27858840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 24084252 - 24084114
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataac---tttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagt 202  Q
    ||||||||||| | ||||| ||||| |||   ||| |||||||||||||||| ||||||| ||||||||  |||| ||||| || ||||| ||||||| |    
T  24084252 aaaaatagaaaattttcatcaaaaacaacaattttttgactttcataaagttaaacattccactttttatcaattttcaatacataatttttatattaat 24084153  T
Q  203 tttcttaactagtgtcctcggaacactagttagcatttc 241  Q
     || ||||||||||||||  |  ||||||||||||||||    
T  24084152 ctttttaactagtgtcctaagggcactagttagcatttc 24084114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 22315136 - 22315049
Alignment:
Q  129 aataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtg 216  Q
    ||||||| | ||||||||||||||| |||||||| |||||| | || ||| |||||||||| |||||||||||| | |||||||||||    
T  22315136 aataactgtttgactttcataaagtggaacattccacttttcattatttcccaatgcaaaacttctatattagtctccttaactagtg 22315049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 25113875 - 25113810
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagtttt 205  Q
    |||||||||||||||| ||||||||| |||| || ||||| || |||||||||||||||||||||||    
T  25113875 tgactttcataaagttaaacattctatttttcaccaattccca-tgcaaaatttctatattagtttt 25113810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 14321030 - 14321140
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataac---tttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagt 202  Q
    ||||||||||| | ||||||||||| |||   ||| | ||||||||||| || |||||| ||||||| |  |||| |||||||| ||||||||||||| |    
T  14321030 aaaaatagaaaattttcattaaaaacaacaacttttttactttcataaaattaaacattttacttttcatcaattttcaatgcataatttctatattaat 14321129  T
Q  203 tttcttaacta 213  Q
     ||||||||||    
T  14321130 cttcttaacta 14321140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 30640302 - 30640215
Alignment:
Q  129 aataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtg 216  Q
    ||||| ||| ||| |||||||||||  ||||||  |||||| | || ||||||||||||||||||||||||||| | |||| ||||||    
T  30640302 aataattttttgattttcataaagtgaaacattacacttttcattatttctcaatgcaaaatttctatattagtctccttatctagtg 30640215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 35838330 - 35838425
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataac---tttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatatt 199  Q
    ||||||| ||| | || ||||||||||||   ||| |||||||||||||||| |||||||||||||| || |||| |||||||| ||||| ||||||    
T  35838330 aaaaatataaaatttttattaaaaataacaattttttgactttcataaagtt-aacattctacttttcaccaattttcaatgcataatttttatatt 35838425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 26663210 - 26663106
Alignment:
Q  111 tagaaattcttcattaaaa--ataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttctt 208  Q
    |||||||| ||||||||||  | ||| || ||| ||||||| |||||||||||| |||||| |  |||| | ||||||||| |||||||||| | |||||    
T  26663210 tagaaatttttcattaaaacaacaaccttttgattttcatagagttgaacattcaacttttcatcaatttttaatgcaaaaattctatattaatcttctt 26663111  T
Q  209 aacta 213  Q
    |||||    
T  26663110 aacta 26663106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 15646183 - 15646123
Alignment:
Q  156 aacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtg 216  Q
    ||||||| |||||| |  |||| |||||||| ||||||||||||| | |||||||||||||    
T  15646183 aacattccacttttcatcaattttcaatgcataatttctatattaatcttcttaactagtg 15646123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 44107771 - 44107703
Alignment:
Q  132 aactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatatta 200  Q
    |||||| |||||||||||||| | |||||||||||||| || ||||  |||| || |||||| ||||||    
T  44107771 aactttttgactttcataaaggtaaacattctacttttcaccaatttccaatacataatttcaatatta 44107703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 10424755 - 10424676
Alignment:
Q  129 aataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttctt 208  Q
    ||||||||| |||||||||||| |||||| ||| ||||||| || ||||  ||||||||| |||||||||||||||||||    
T  10424755 aataactttttgactttcataaggttgaaaattttacttttgaccaatttccaatgcaaagtttctatattagttttctt 10424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 27133987 - 27133915
Alignment:
Q  141 actttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaacta 213  Q
    ||||||||| |||| ||||||| |||||| || |||| ||||||||||||| |||||||| | ||||||||||    
T  27133987 actttcatatagttaaacattccacttttcaccaattttcaatgcaaaattactatattaatcttcttaacta 27133915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 31247816 - 31247660
Alignment:
Q  87 cactaattaagaaagtgtaaaaaatagaaattcttcattaaaaataac---tttctgactttcataaagttgaacattctactttttactaattctcaat 183  Q
    ||||| |||||||||| |||||  |||||||| | ||||||||| |||   ||| ||||||| ||||||| |||||||  |||||| |  | ||  ||||    
T  31247816 cactagttaagaaagtttaaaa--tagaaattttccattaaaaacaacaactttttgacttttataaagtggaacatttcacttttcatcattttccaat 31247719  T
Q  184 gcaaaatttctatattagttttcttaactagtgtcctcggaacactagttagcatttcc 242  Q
    ||||||||||||||||||| |  ||||| |||||||| |   ||||||||| |||||||    
T  31247718 gcaaaatttctatattagtctcgttaacaagtgtcctggaggcactagttaacatttcc 31247660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 9062861 - 9062958
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataac---tttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatatta 200  Q
    ||||||||||| | ||||||||||| |||   ||| |  ||||||||||||| ||||||| |||||| || ||||  ||||||| |||||||||||||    
T  9062861 aaaaatagaaaattttcattaaaaacaacaactttttatctttcataaagttaaacattcaacttttcaccaatttccaatgcataatttctatatta 9062958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 31238400 - 31238290
Alignment:
Q  132 aactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacactag 231  Q
    |||||| ||||||| ||||||| |||||||  |||||| |  | ||  ||||||||||||||||||||||| |  ||||| |||||||| |   ||||||    
T  31238400 aactttttgacttttataaagtggaacatttcacttttcatcattttccaatgcaaaatttctatattagtctcgttaacaagtgtcctggaggcactag 31238301  T
Q  232 ttagcatttcc 242  Q
    ||| |||||||    
T  31238300 ttaacatttcc 31238290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 43470481 - 43470560
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtc 218  Q
    ||||||||||||||||||| |||| ||||||||| | |||  ||||| ||||||||||||||||||| |||| |||||||    
T  43470481 tgactttcataaagttgaatattccactttttacaacttcctaatgccaaatttctatattagtttttttaattagtgtc 43470560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 32810068 - 32809987
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattag-ttttcttaactagtgtcc 219  Q
    ||||||| ||||||||||||||| ||||||| || | ||| ||||||||| |||||||||||| |||||||||||| |||||    
T  32810068 tgacttttataaagttgaacattttacttttcaccacttcccaatgcaaagtttctatattagtttttcttaactaatgtcc 32809987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 17563607 - 17563516
Alignment:
Q  149 aaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacactagttagcattt 240  Q
    |||||||||||| ||||||||||  |||| | |||||||||||| || |||||||||||||||||| | | | ||  |||||||||||||||    
T  17563607 aaagttgaacatactactttttaacaatttttaatgcaaaatttttaaattagttttcttaactagagccttgggggcactagttagcattt 17563516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 37807345 - 37807232
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataac---tttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagt 202  Q
    ||||||||||||| || |||||||| |||   ||| |||||||||||||||| ||||||  | |||| || ||||   |||||| ||||||||||||| |    
T  37807345 aaaaatagaaattttttattaaaaacaacacctttttgactttcataaagttaaacatttcatttttcaccaatttgtaatgcataatttctatattaat 37807246  T
Q  203 tttcttaactagtg 216  Q
     |||||||||||||    
T  37807245 cttcttaactagtg 37807232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 37985219 - 37985142
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtg 216  Q
    |||||||||||||||| ||||||  |||||| || |||| |||||| | ||||||||||||| | || ||||||||||    
T  37985219 tgactttcataaagtttaacatttcacttttcaccaattttcaatgtataatttctatattaatcttattaactagtg 37985142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 239
Target Start/End: Original strand, 38778729 - 38778907
Alignment:
Q  62 gtcatgctaactactatcctagaggcactaattaagaaagtgtaaaaaatagaaattcttcattaaaaataact---ttctgactttcataaagttgaac 158  Q
    |||||| ||||||||| ||  | ||||||| ||||||||||  |||||||||||||| ||  || |||| |||    || ||||||| | ||||||||||    
T  38778729 gtcatgttaactactacccctggggcactagttaagaaagt--aaaaaatagaaatttttacttgaaaacaacaaacttttgacttttaaaaagttgaac 38778826  T
Q  159 attctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacactagttagcatt 239  Q
    || | | ||||||   ||| |||||||||||||| || |||||| | |||| |||||| ||  ||||||||||||| ||||    
T  38778827 atacaattttttaacgattttcaatgcaaaatttttaaattagtctccttatctagtgccccaggaacactagttaacatt 38778907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 242
Target Start/End: Original strand, 45475185 - 45475297
Alignment:
Q  129 aataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacac 228  Q
    ||||||||| ||||||| ||||||| |||||||| |  ||| |  | |||||||||||||| ||||| |||| | | ||||||||||| || | || |||    
T  45475185 aataactttttgactttaataaagtagaacattccatatttcatcatttctcaatgcaaaacttctaaattaatctccttaactagtg-ccccagagcac 45475283  T
Q  229 tagttagcatttcc 242  Q
    |||||| |||||||    
T  45475284 tagttaacatttcc 45475297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 31776069 - 31776097
Alignment:
Q  190 tttctatattagttttcttaactagtgtc 218  Q
    |||||||||||||||||||||||||||||    
T  31776069 tttctatattagttttcttaactagtgtc 31776097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 52708531 - 52708612
Alignment:
Q  132 aactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaacta 213  Q
    |||||| |||||||||||||||| ||||||| |||||| ||||||| |||||| | |||||||||||||   ||||||||||    
T  52708531 aactttttgactttcataaagttaaacattcaacttttcactaattttcaatgtacaatttctatattaaccttcttaacta 52708612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 43134445 - 43134564
Alignment:
Q  83 gaggcactaattaagaaagtgtaaaaaatagaaattcttcattaaaaataactttctgactttcataaagttgaacattctactttttactaattctcaa 182  Q
    ||||||||| ||||| ||||   ||||||||||||| ||||| ||||| |||||| | ||||||| ||||||||||||||||||| | || | |||  ||    
T  43134445 gaggcactagttaaggaagt---aaaaatagaaatttttcataaaaaacaactttttaactttcaaaaagttgaacattctacttatcaccacttcctaa 43134541  T
Q  183 tgcaaaatttctatattagtttt 205  Q
    |||||| |||||| |||| ||||    
T  43134542 tgcaaagtttctacattaatttt 43134564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 32004491 - 32004408
Alignment:
Q  132 aactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagt 215  Q
    |||||| |||||||||||||||| ||||||| ||||||  | |||| | |||||| ||||||||||||| | ||||||||||||    
T  32004491 aactttttgactttcataaagttaaacattccacttttccccaattttaaatgcataatttctatattaatcttcttaactagt 32004408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 29588628 - 29588566
Alignment:
Q  179 tcaatgcaaaattt-ctatattagttttc-ttaactagtgtcctcggaacactagttagcatt 239  Q
    |||||||||||||| |||| || |||||| ||||||||||| |||||||||||||||||||||    
T  29588628 tcaatgcaaaattttctatttttgttttccttaactagtgttctcggaacactagttagcatt 29588566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 46737354 - 46737258
Alignment:
Q  106 aaaaatagaaattcttcattaaaaa---taactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatatt 199  Q
    ||||||||||| | |||||||||||   ||||||| ||| |||||||||||| ||||||| |||||| |  ||||  ||||||| ||||||||||||    
T  46737354 aaaaatagaaaattttcattaaaaacaataactttttgattttcataaagttaaacattccacttttcatcaatttccaatgcagaatttctatatt 46737258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 779844 - 779746
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataac----tttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatatta 200  Q
    ||||||||||| | ||||||||||| |||    ||| |||||||||||||||| ||||||| |||||| || ||||   |||||| |||||||||||||    
T  779844 aaaaatagaaaattttcattaaaaacaacaacttttttgactttcataaagttaaacattcaacttttcaccaatttcaaatgcataatttctatatta 779746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 26784769 - 26784846
Alignment:
Q  139 tgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtg 216  Q
    ||||||| | |||||||||||| | ||||||||  ||||  |||||||||||||||| |||||| | |||||||||||    
T  26784769 tgacttttaaaaagttgaacataccactttttaacaatttccaatgcaaaatttctaaattagtctccttaactagtg 26784846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 55292291 - 55292429
Alignment:
Q  106 aaaaatagaaattcttcattaaaaataac---tttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagt 202  Q
    |||||||||| || ||||||||||| |||   ||| ||| ||||||||| || ||||||  | |||| || |||| | ||| || ||||||||||||| |    
T  55292291 aaaaatagaattttttcattaaaaacaacaactttttgattttcataaaattaaacatttcagttttcaccaatttttaatacataatttctatattaat 55292390  T
Q  203 tttcttaactagtgtcctcggaacactagttagcatttc 241  Q
     |||||||||||||| ||  ||||| |||||| ||||||    
T  55292391 cttcttaactagtgtgcttagaacattagttaacatttc 55292429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 16467882 - 16467995
Alignment:
Q  129 aataactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtgtcctcggaacac 228  Q
    ||||||||| | |||||||||||||| ||||||| |||||   | | ||| ||||||| ||||||||||||| | |||||||||| |||| |  ||  |     
T  16467882 aataacttttttactttcataaagttaaacattcaactttcatcaatttc-caatgcataatttctatattaatcttcttaactattgtctttagagtat 16467980  T
Q  229 tagttagcatttccc 243  Q
    |||||||||||||||    
T  16467981 tagttagcatttccc 16467995  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 27924034 - 27924103
Alignment:
Q  147 ataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagtg 216  Q
    |||||||| ||||||| |||||  || ||||  ||||||| ||||||||||||| | |||||||||||||    
T  27924034 ataaagttaaacattcaactttccaccaatttccaatgcataatttctatattaatcttcttaactagtg 27924103  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 38179913 - 38179832
Alignment:
Q  132 aactttctgactttcataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaacta 213  Q
    |||||| |||||||||||||||| ||||||| |||||| |  ||||   ||| || ||||||||||||| | ||||||||||    
T  38179913 aactttttgactttcataaagttaaacattcaacttttcataaatttctaatacataatttctatattaatcttcttaacta 38179832  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 35803556 - 35803624
Alignment:
Q  147 ataaagttgaacattctactttttactaattctcaatgcaaaatttctatattagttttcttaactagt 215  Q
    |||||||| || |||  ||||||||| |||| |||||||| |||||||||||||   ||||||||||||    
T  35803556 ataaagttaaatatttcactttttaccaattttcaatgcataatttctatattaaacttcttaactagt 35803624  T

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