View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5183_low_18 (Length: 352)

Name: NF5183_low_18
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5183_low_18
NF5183_low_18
[»] chr7 (10 HSPs)
chr7 (1-318)||(25026469-25026806)
chr7 (36-102)||(1706598-1706664)
chr7 (44-86)||(16706713-16706755)
chr7 (44-86)||(17680949-17680991)
chr7 (44-86)||(35016093-35016135)
chr7 (38-86)||(12287091-12287139)
chr7 (44-86)||(35015935-35015977)
chr7 (38-70)||(965259-965291)
chr7 (50-86)||(2485432-2485468)
chr7 (51-79)||(41853369-41853397)
[»] chr1 (12 HSPs)
chr1 (38-99)||(43728655-43728716)
chr1 (44-86)||(48379485-48379527)
chr1 (38-99)||(8259508-8259569)
chr1 (45-101)||(14624965-14625021)
chr1 (44-86)||(15342902-15342944)
chr1 (38-70)||(33016403-33016435)
chr1 (38-86)||(47024318-47024366)
chr1 (46-86)||(51776556-51776596)
chr1 (44-86)||(9694120-9694162)
chr1 (44-86)||(25389758-25389800)
chr1 (40-77)||(42693542-42693579)
chr1 (49-86)||(48941596-48941633)
[»] chr3 (3 HSPs)
chr3 (38-86)||(18090375-18090423)
chr3 (38-86)||(26952578-26952626)
chr3 (49-86)||(37333185-37333222)
[»] chr4 (11 HSPs)
chr4 (38-86)||(16529841-16529889)
chr4 (38-86)||(36755123-36755171)
chr4 (44-102)||(12832468-12832526)
chr4 (36-86)||(38476301-38476351)
chr4 (38-86)||(45549204-45549252)
chr4 (46-79)||(55693130-55693163)
chr4 (38-82)||(3534073-3534117)
chr4 (36-84)||(15024721-15024769)
chr4 (44-86)||(56192225-56192267)
chr4 (49-86)||(37996916-37996953)
chr4 (38-86)||(13205711-13205759)
[»] chr2 (5 HSPs)
chr2 (36-86)||(9032740-9032790)
chr2 (44-99)||(840329-840384)
chr2 (43-83)||(5732573-5732613)
chr2 (43-83)||(5803091-5803131)
chr2 (38-79)||(19494750-19494791)
[»] chr8 (5 HSPs)
chr8 (38-86)||(8845568-8845616)
chr8 (35-76)||(43417931-43417971)
chr8 (44-83)||(41407210-41407249)
chr8 (46-86)||(37127709-37127749)
chr8 (50-86)||(40216365-40216401)
[»] chr6 (7 HSPs)
chr6 (38-86)||(32183786-32183834)
chr6 (45-86)||(22746984-22747025)
chr6 (38-86)||(20969802-20969850)
chr6 (38-76)||(2912701-2912739)
chr6 (44-82)||(15135085-15135123)
chr6 (38-76)||(15489397-15489435)
chr6 (44-84)||(6838015-6838055)
[»] chr5 (6 HSPs)
chr5 (38-86)||(9622416-9622464)
chr5 (41-86)||(35377976-35378021)
chr5 (44-86)||(27903562-27903604)
chr5 (44-86)||(43100986-43101028)
chr5 (49-86)||(19279440-19279477)
chr5 (38-83)||(23418875-23418920)
[»] scaffold0355 (1 HSPs)
scaffold0355 (36-86)||(2796-2846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (44-86)||(428296-428338)
[»] scaffold1940 (1 HSPs)
scaffold1940 (38-79)||(567-608)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 25026806 - 25026469
Alignment:
Q  1 ttgacgtgtaagtaatctttgatatgttcctttttataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtctt 100  Q
    |||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||||||||||| ||||||||||||||| | | ||||||| |    
T  25026806 ttgacgtgtaagtaatctttgatatgttccttttcacaatggaggtgtctatttaatatggtgctaaataaatgaagcacccaccattacgaatggtcat 25026707  T
Q  101 aacatgata----tt---------ttaaaatctc--gtctcctatcctcactcaatcaacatagagagaaacctaactccacttcaaaaattcttttca- 184  Q
     | ||  ||    ||         ||||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||     
T  25026706 gatattttaaaatttctccctccattaaaatctcttgtctcctatcctcactcaagcaacatagagaggaacctaactccacttcaaaaattcttttcat 25026607  T
Q  185 ----gaggcttatcaaccagtttggtgttaattaattagatttgaatttgaaataattactttgtgaagaggaatttgaaataattaatataagtatgat 280  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026606 atttgaggcttatcaaccagtttggtgttaattaattagatttgaatttgaaataattactttgtgaagaggaatttgaaataattaatataagtatgat 25026507  T
Q  281 aattatgacgacaatttgacaaatggttgtggtcccta 318  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25026506 aattatgacgacaatttgacaaatggttgtggtcccta 25026469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 1706598 - 1706664
Alignment:
Q  36 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtcttaa 102  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||||| ||  |||||||||||    
T  1706598 ataatgggggtgcctatttaatgtggtgccgaatagatgaagcacccaccattgttaatggtcttaa 1706664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 16706713 - 16706755
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  16706713 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 16706755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 17680949 - 17680991
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  17680949 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 17680991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 35016093 - 35016135
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  35016093 ggtgcctatttaatatggtgctaaatagatgaagcacccacca 35016135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 12287139 - 12287091
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  12287139 aatggaggtgcctatttaatgtggtgttaaataggtaaagcacccacca 12287091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 35015935 - 35015977
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  35015935 ggtgcctatttaatatggtgctaaatagatgaaacacccacca 35015977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 965291 - 965259
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaata 70  Q
    ||||| |||||||||||||||||||||||||||    
T  965291 aatgggggtgcctatttaatgtggtgctaaata 965259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 2485432 - 2485468
Alignment:
Q  50 tatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  2485432 tatttaatatggtgctaaatagatgaaggacccacca 2485468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 41853369 - 41853397
Alignment:
Q  51 atttaatgtggtgctaaatagatgaagca 79  Q
    |||||||||||||||||||||||||||||    
T  41853369 atttaatgtggtgctaaatagatgaagca 41853397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 43728655 - 43728716
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  43728655 aatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgtaaatggtct 43728716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 48379527 - 48379485
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  48379527 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 48379485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 8259508 - 8259569
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 99  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||| || | |||||||    
T  8259508 aatgggggtgcctatttaatatgatgctaaatagatgaagcacccaccattgtagatggtct 8259569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 14625021 - 14624965
Alignment:
Q  45 gtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtctta 101  Q
    |||||| |||||||||||||||||||| |||||||||||||| || | |||||||||    
T  14625021 gtgcctctttaatgtggtgctaaataggtgaagcacccaccattgtagatggtctta 14624965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 15342902 - 15342944
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  15342902 ggtgcttatttaatgtggtgctaaataggtgaagcacccacca 15342944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 33016435 - 33016403
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaata 70  Q
    |||||||||||||||||||||||||||||||||    
T  33016435 aatggaggtgcctatttaatgtggtgctaaata 33016403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 47024366 - 47024318
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  47024366 aatggaggtgcctatttaatgtggtgtgaaatagattacgcacccacca 47024318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 51776596 - 51776556
Alignment:
Q  46 tgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  51776596 tgcctatttaatgtggtgctaaataggtgaaacacccacca 51776556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 9694120 - 9694162
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||| | ||||||||||||| ||||||||||||||    
T  9694120 ggtgcctatttagtatggtgctaaataggtgaagcacccacca 9694162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 25389758 - 25389800
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||| ||||||||||||||||||||||| | ||||||||||||    
T  25389758 ggtgtctatttaatgtggtgctaaataggttaagcacccacca 25389800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 42693542 - 42693579
Alignment:
Q  40 tggaggtgcctatttaatgtggtgctaaatagatgaag 77  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  42693542 tggaggtgcctatttaatatggtgctaaataaatgaag 42693579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 48941596 - 48941633
Alignment:
Q  49 ctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  48941596 ctatttaatatggtgctaaatagatgaaacacccacca 48941633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 18090423 - 18090375
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18090423 aatggaggtgcctatttaatgtggtgctaaatagatgaagcatccacca 18090375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 26952578 - 26952626
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  26952578 aatggaggtgtctatttaatatggtgctaaataggtgaagcacccacca 26952626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 37333222 - 37333185
Alignment:
Q  49 ctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37333222 ctatttaatgtggtgctaaataggtgaagcacccacca 37333185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 16529889 - 16529841
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  16529889 aatgggggtgcctatttaatgtggtgctaaataggtgaagcacccacca 16529841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 36755171 - 36755123
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  36755171 aatggaggtgtctatttaatatggtgctaaatagatgaagcacccacca 36755123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 12832468 - 12832526
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtcttaa 102  Q
    |||||| ||||||||||||||||||||| |||||||||||||| || | ||||||||||    
T  12832468 ggtgccgatttaatgtggtgctaaataggtgaagcacccaccattgtagatggtcttaa 12832526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 38476301 - 38476351
Alignment:
Q  36 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  38476301 ataatgggggtgtctatttaatgtggtgctaaataggtgaagcacccacca 38476351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 45549204 - 45549252
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  45549204 aatggaggtgtctatttaatgtggtgctaaataggtgaaacacccacca 45549252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 55693130 - 55693163
Alignment:
Q  46 tgcctatttaatgtggtgctaaatagatgaagca 79  Q
    ||||||||||||||||||||||||||||||||||    
T  55693130 tgcctatttaatgtggtgctaaatagatgaagca 55693163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 3534073 - 3534117
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcaccc 82  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||||    
T  3534073 aatgggggtgcctatttaatgtgatgctaaataggtgaagcaccc 3534117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 15024721 - 15024769
Alignment:
Q  36 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccac 84  Q
    |||||||||||||||||||||| || |||||||||| ||||||| ||||    
T  15024721 ataatggaggtgcctatttaatatgatgctaaataggtgaagcatccac 15024769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 56192267 - 56192225
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||| ||||||| | ||||||||||||    
T  56192267 ggtgcctatttaatgtggtgttaaataggtaaagcacccacca 56192225  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 37996953 - 37996916
Alignment:
Q  49 ctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  37996953 ctatttaatgtggtgctaaatagaagaagcatccacca 37996916  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 13205711 - 13205759
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||||| || |||||||||||||| |||||||| | ||||||||||||    
T  13205711 aatggagatgtctatttaatgtggtactaaataggttaagcacccacca 13205759  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 9032740 - 9032790
Alignment:
Q  36 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  9032740 ataatagaggtgcctatttaatgtggtgttaaataggtgaagcacccacca 9032790  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 840329 - 840384
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 99  Q
    |||||||||||||||||||||||| ||| |||||||||||||| ||  ||||||||    
T  840329 ggtgcctatttaatgtggtgctaagtaggtgaagcacccaccattgtgaatggtct 840384  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 5732613 - 5732573
Alignment:
Q  43 aggtgcctatttaatgtggtgctaaatagatgaagcaccca 83  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5732613 aggtgcctatttaatgtggtgctaaataggttaagcaccca 5732573  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 5803131 - 5803091
Alignment:
Q  43 aggtgcctatttaatgtggtgctaaatagatgaagcaccca 83  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5803131 aggtgcctatttaatgtggtgctaaataggttaagcaccca 5803091  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 19494791 - 19494750
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagca 79  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  19494791 aatgggggtgcctatttaatatggtactaaatagatgaagca 19494750  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 8845616 - 8845568
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  8845616 aatggaagtgcctatttaatgtggtgctaaataggtaaagcacccacca 8845568  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 43417931 - 43417971
Alignment:
Q  35 tataatggaggtgcctatttaatgtggtgctaaatagatgaa 76  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  43417931 tataatggag-tgcctatttaatgtggtgctaaatagatgaa 43417971  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 41407249 - 41407210
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcaccca 83  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  41407249 ggtgcctatttaatatggtgttaaatagatgaagcaccca 41407210  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 37127709 - 37127749
Alignment:
Q  46 tgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||| ||||||| | ||||||||||||    
T  37127709 tgcctatttaatgtggtgataaataggtaaagcacccacca 37127749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 40216401 - 40216365
Alignment:
Q  50 tatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  40216401 tatttaatgtggtgctaaataggtgaagcatccacca 40216365  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 32183834 - 32183786
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||    
T  32183834 aatgggggtgcctatttaatatgatgctaaatagatgaagcacccacca 32183786  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 22747025 - 22746984
Alignment:
Q  45 gtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  22747025 gtgcctatttaatatagtgctaaatagatgaagcacccacca 22746984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 20969802 - 20969850
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||| |||||||| ||||||||||||||||||| ||||| ||||||||    
T  20969802 aatgggggtgcctacttaatgtggtgctaaataggtgaagtacccacca 20969850  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 2912739 - 2912701
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaa 76  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  2912739 aatggaggtgcctatttaatgtggttctaaataggtgaa 2912701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 15135085 - 15135123
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcaccc 82  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  15135085 ggtgcctatttaatgtggtgctaaataggtgaagtaccc 15135123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 15489435 - 15489397
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaa 76  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  15489435 aatgggggtgcctatttaatgtggtgctaaataggtgaa 15489397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 6838015 - 6838055
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccac 84  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  6838015 ggtgcctatttaatatgatgctaaataggtgaagcacccac 6838055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 9622416 - 9622464
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  9622416 aatgggggtgtctatttaatgtggtgctaaataggtgaagcacccacca 9622464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 35377976 - 35378021
Alignment:
Q  41 ggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||||||||||||||| || || ||||||||||||||||||||||    
T  35377976 ggaggtgcctatttaatatgatgttaaatagatgaagcacccacca 35378021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 27903604 - 27903562
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||||| ||||||||||| |||| |||||||||    
T  27903604 ggtgcctatttaatgtagtgctaaataggtgaaacacccacca 27903562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 43100986 - 43101028
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    ||||| |||||||||||||||||||||| | ||||||||||||    
T  43100986 ggtgcttatttaatgtggtgctaaataggttaagcacccacca 43101028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 19279477 - 19279440
Alignment:
Q  49 ctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  19279477 ctatttaatgtgatgctaaataggtgaagcacccacca 19279440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 23418920 - 23418875
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagcaccca 83  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||    
T  23418920 aatgggggtgcctatttaatacggtgttaaatagatgaagcaccca 23418875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 2796 - 2846
Alignment:
Q  36 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||| ||||||||||||| ||||||||||||| |||| |||||||||    
T  2796 ataatggaagtgcctatttaatatggtgctaaataggtgaaacacccacca 2846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 428338 - 428296
Alignment:
Q  44 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 86  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  428338 ggtgcctatttaatctggtgctaaataggtgaagcacccacca 428296  T

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Target: scaffold1940 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 608 - 567
Alignment:
Q  38 aatggaggtgcctatttaatgtggtgctaaatagatgaagca 79  Q
    ||||| |||||||||||||||||||| ||||||| |||||||    
T  608 aatgggggtgcctatttaatgtggtgttaaataggtgaagca 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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