View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_20 (Length: 299)
Name: NF5183_low_20
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_20 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 25027073 - 25026784
Alignment:
| Q |
19 |
ctaaatatttggtgtattttgaataggtagtcagagtcactcttggatgtaatttgtaattgcaatttggaagtgtattccaacttgttaaattttaaag |
118 |
Q |
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| T |
25027073 |
ctaaatatttggtgtattttgaataggtagtcagagtcactcttggatgtaatttgtaattgcaatttggaagtgtattccaacttgttaaattttaaag |
25026974 |
T |
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| Q |
119 |
tggaataattaaat---------------------gatatatggctatcaatttggcctatcacttaacaaaatttaaacatttgttaaaataaaaaatc |
197 |
Q |
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| T |
25026973 |
tggaataattaaataatcgatttcttctttaaaatgatatatggctatcaatttggcctatcacttaacaaaatttaaacatttgttaaaataaaaaatc |
25026874 |
T |
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| Q |
198 |
tttatgaggattagttttgcaatctaaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatctttgat |
287 |
Q |
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| T |
25026873 |
tttatgaggattagttttgcaatctaaaaagatctagcggcacaacttgttggttgtttatcttctattgacgtgtaagtaatctttgat |
25026784 |
T |
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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 103049 - 102967
Alignment:
| Q |
198 |
tttatgaggattagttttgcaatctaaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaat |
280 |
Q |
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| T |
103049 |
tttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat |
102967 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 46940962 - 46941020
Alignment:
| Q |
223 |
aaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatc |
281 |
Q |
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| T |
46940962 |
aaaaagacctagcggtgcaacttgttgcctgtttaccttctattcatgtgtaattaatc |
46941020 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 6866007 - 6866071
Alignment:
| Q |
223 |
aaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatctttgat |
287 |
Q |
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|||||| ||||||| |||||||||||| | |||| |||||||| | |||||||||||| ||||| |
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| T |
6866007 |
aaaaaggtctagcgacacaacttgttgtctttttatcttctattcatgtgtaagtaatcattgat |
6866071 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 21560791 - 21560847
Alignment:
| Q |
206 |
gattagttttgcaatctaaaaagatctagcggcacaacttgttgcttgtttaccttc |
262 |
Q |
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|||||||||| | |||||||||| | || ||||||||||||||||| |||| ||||| |
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| T |
21560791 |
gattagttttaccatctaaaaaggtttaacggcacaacttgttgctcgtttgccttc |
21560847 |
T |
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