View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_23 (Length: 261)
Name: NF5183_low_23
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 44291121 - 44290881
Alignment:
| Q |
8 |
agattattctgtattatatatatgattttgataataatgttaacaatggttnnnnnnntgtttgggaagagaaattattattaataactctatcatttta |
107 |
Q |
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| T |
44291121 |
agattatcctgtattatatatatgattttgataataatgttaacaatggttaaaaaaatgtttgggaagagaaattattattaataactctatcatttta |
44291022 |
T |
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| Q |
108 |
caatttgtctcaacagaaacttggactacagagttaaactcttgccacaaaattgacatctcttggacatgttaacaatggtttaatgtttactcaaaac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44291021 |
caatttgtctcaacagaaacttggactacagagttaagctcttgccacaaaattgacatctcttggacatgtcaacaatggtttaatgtttactcaaaac |
44290922 |
T |
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| Q |
208 |
attcattgaaaattcttgtccaattaaacatgtgtgttttg |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290921 |
attcattgaaaattcttgtccaattaaacatgtgtgttttg |
44290881 |
T |
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