View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_3 (Length: 584)
Name: NF5183_low_3
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 48018877 - 48019130
Alignment:
| Q |
18 |
ataaggtcctccacgatacccacgtacgggctgctccatctcctgatgcatgagctgctttactgcctgatgtgcgagctgctccaaattttgatgattg |
117 |
Q |
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| T |
48018877 |
ataaggtcctccacgatacccacgtacgggctgctccatctcctgatgcatgagctgctccactgcctgatgtgcaagctgctccaaattttgatgattg |
48018976 |
T |
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| Q |
118 |
ggttgctcctctgcatgtataggtggttgatcacactgctgatcatgaacctcttcctcgtctagtcgtggttcgttgcaatgtgccactgaaaaaatgg |
217 |
Q |
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| T |
48018977 |
ggttgctcctctgcatgtataggtggttgatcacactgctgatcatgaacctcttcctcgtctagtcgtggttcgttgcaatgtgccactgaaaaaatgg |
48019076 |
T |
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| Q |
218 |
aaaagaattagtacaacagaaaaacagtagcaaattgaaaacaagttatttaca |
271 |
Q |
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| T |
48019077 |
aaaagaattagtgcaacagaaaaacagtagcaaattgaaaataagttatttaca |
48019130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 314 - 570
Target Start/End: Original strand, 48019207 - 48019443
Alignment:
| Q |
314 |
ggtggtaatagtgttccgaaaaacaagtattcaccggagaaagatgtatgagttttccgtaaataaaatcttcatagatacgtagatatcaattttccag |
413 |
Q |
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| T |
48019207 |
ggtggtaatagtgttccgaaaaacaagtattcaccggagaaagatctatgagttttccgtaaacaaactcttcatagatacgtagatatcaattttccag |
48019306 |
T |
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| Q |
414 |
aatccagattacaaatcggaacaggaaacaattgcttgcgttttccaataatatacacggcacaccgaaaatgtttgattgtgttttccgggtgagattt |
513 |
Q |
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| T |
48019307 |
aatccagattacaaatcggaaccggaaacaattgcttgcgtttt--------------------ccgaaaatgtttgattgtgttttccgggtgagattt |
48019386 |
T |
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| Q |
514 |
gaatactgaaaaactcaaaagtaatttttcaatgtgtttaagcaaacttacttctct |
570 |
Q |
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| T |
48019387 |
gaatactgaaaaactcaaaagtaatttttcaatgtgtttaagcaaacttacttctct |
48019443 |
T |
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