View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_30 (Length: 238)
Name: NF5183_low_30
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_30 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36517 - 36296
Alignment:
| Q |
1 |
aaacaaacttcatttcatttattcaagaaacacaacttcttttcattacaatcaacaatgtcataaacttcataacattgatttaacatttgaactgagt |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36517 |
aaacaaacttcatttcattgattcaagaaacacaacttcttttcattacaatcaacaatgtcataaacttcataacattgatttaacatttgaaccgagt |
36418 |
T |
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| Q |
101 |
cattacactacatcttcatatatgaaatgaacattgcccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttctt |
200 |
Q |
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| T |
36417 |
cattacactacatcttcatatatgaaatgaacattgcccaaaatacaaccaacataaccataaacaaatttgccttctttcttgagtattggagcttctt |
36318 |
T |
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| Q |
201 |
ctttaacttctcatttttgttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36317 |
ctttaacttctcatttttgttg |
36296 |
T |
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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 23573754 - 23573603
Alignment:
| Q |
69 |
ttcataacattgatttaacatttgaactgagtcattacactacatcttcatatatgaaatgaacattgcccaagatacaaccaacagaaccataaacaaa |
168 |
Q |
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||||||||||||||||||||||||||| ||| || |||||||||| ||| ||||| ||||||||||||||||||||||||||| || |||||||||| |
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| T |
23573754 |
ttcataacattgatttaacatttgaaccgag--atcacactacatcgtcagatatgtaatgaacattgcccaagatacaaccaatgtaaacataaacaaa |
23573657 |
T |
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| Q |
169 |
tttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttg |
222 |
Q |
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| T |
23573656 |
tttgccttctttcttgagtattggagtttcttctttaacttgtcatttttgttg |
23573603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 31814943 - 31815023
Alignment:
| Q |
138 |
ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcattttt |
218 |
Q |
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| T |
31814943 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgttttt |
31815023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 13507611 - 13507539
Alignment:
| Q |
150 |
caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttg |
222 |
Q |
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| T |
13507611 |
caacaaaaccataaacaaatttgcattcttccttgagtattagagcttcttctttaacttctcgtttttgttg |
13507539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 13507638 - 13507709
Alignment:
| Q |
150 |
caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgtt |
221 |
Q |
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| T |
13507638 |
caacaaaatcataaacaaatttgccttcttccttgagtattggagcttcttctttagcttctcgtttttgtt |
13507709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 7799387 - 7799468
Alignment:
| Q |
137 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcattttt |
218 |
Q |
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| T |
7799387 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcattttt |
7799468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 19398488 - 19398569
Alignment:
| Q |
137 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcattttt |
218 |
Q |
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||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| || ||||||||||| |
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| T |
19398488 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaaattctcattttt |
19398569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 3429 - 3510
Alignment:
| Q |
137 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcattttt |
218 |
Q |
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||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| |
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| T |
3429 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgttttt |
3510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 22059336 - 22059416
Alignment:
| Q |
138 |
ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcattttt |
218 |
Q |
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|||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| |
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| T |
22059336 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgttttt |
22059416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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