View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_5 (Length: 540)
Name: NF5183_low_5
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 32365001 - 32365514
Alignment:
| Q |
18 |
atcataactgttcccggttctagcttcttgagcaagagagcaccaacagcagcataaccaaagtgtgcaatcagaaaatgatggttttccaaaacagaat |
117 |
Q |
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||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32365001 |
atcataactattcccagtcctggcttcttgagcaagagagcaccaacagcagcataaccaaagtgtgcaatcagaaagtgatggttttccaaaacagaat |
32365100 |
T |
|
| Q |
118 |
tcataggcaggcaaattaaacctctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtg |
217 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365101 |
ttataggcaggcaaattgaacctctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtg |
32365200 |
T |
|
| Q |
218 |
cttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacat |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365201 |
tttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacat |
32365300 |
T |
|
| Q |
318 |
gttcccaaaaccaagtctctccatgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtatt |
417 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365301 |
gttcccaaatccaagtctctccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtatt |
32365400 |
T |
|
| Q |
418 |
cctccactccatttcggtctattttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365401 |
cctccactccatttcggtctattttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacct |
32365500 |
T |
|
| Q |
518 |
gtgattcttcatct |
531 |
Q |
| |
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|||||||||||||| |
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| T |
32365501 |
gtgattcttcatct |
32365514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 32376686 - 32377199
Alignment:
| Q |
18 |
atcataactgttcccggttctagcttcttgagcaagagagcaccaacagcagcataaccaaagtgtgcaatcagaaaatgatggttttccaaaacagaat |
117 |
Q |
| |
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||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376686 |
atcataactattcccagtcctggcttcttgagcaagagagcaccaacagcagcataaccaaagtgtgcaatcagaaaatgatggttttccaaaacagaat |
32376785 |
T |
|
| Q |
118 |
tcataggcaggcaaattaaacctctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtg |
217 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376786 |
tcataggcaggcaaattgaacctctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtg |
32376885 |
T |
|
| Q |
218 |
cttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacat |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376886 |
cttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacat |
32376985 |
T |
|
| Q |
318 |
gttcccaaaaccaagtctctccatgttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtatt |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32376986 |
gttcccaaatccaagtctctccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtatt |
32377085 |
T |
|
| Q |
418 |
cctccactccatttcggtctattttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacct |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
32377086 |
cctccactccatttcggtctattttctataattcctccttgttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacct |
32377185 |
T |
|
| Q |
518 |
gtgattcttcatct |
531 |
Q |
| |
|
|||||||||||||| |
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|
| T |
32377186 |
gtgattcttcatct |
32377199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 42 - 443
Target Start/End: Original strand, 36121643 - 36122044
Alignment:
| Q |
42 |
ttcttgagcaagagagcaccaacagcagcataaccaaagtgtgcaatcagaaaatgatggttttccaaaacagaattcataggcaggcaaattaaacctc |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||| ||||||| |||| | || || || |||||||| ||||| | |||||||||| ||||| |
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| T |
36121643 |
ttcttgagcaagagagcaccaacaacagaatagccaaagtatgcaatccgaaaccgcaggcttgccgaaacagaagtcataagtaggcaaattatacctc |
36121742 |
T |
|
| Q |
142 |
tttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaa |
241 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || | ||| |||||| |||| || ||| | ||||||| ||| |||||| ||||||| |||| |
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|
| T |
36121743 |
tttctcatttggatcctccaaaaaccaccatagagcataccgaaaaaacatagaacaatcccagcacctactagacattgcctaacagtgtcatcctcaa |
36121842 |
T |
|
| Q |
242 |
ttctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccat |
341 |
Q |
| |
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| |||||| |||||| | || ||||||||||| |||||||| || |||||||| || || || |||||||||||||| ||||| |||||||||||||| |
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| T |
36121843 |
tattaacagcagccaagatgaaaatccaaaagggggccatacagaaaagcataaaagtggcaatgtgaacatacatgtttccaaagccaagtctctccat |
36121942 |
T |
|
| Q |
342 |
gttccaaccaaacacacaaaaactgcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattt |
441 |
Q |
| |
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||||||||||| |||||||| | ||||||||||| | ||||| | || | ||| | |||||||||||||||||| |||||||| || ||||||||| |
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| T |
36121943 |
attccaaccaaatgcacaaaaagtacagaaaagtgataaatatgcttgagagatatcgtcccaaatgtcaagtattccaccactccactttggtctattt |
36122042 |
T |
|
| Q |
442 |
tc |
443 |
Q |
| |
|
|| |
|
|
| T |
36122043 |
tc |
36122044 |
T |
|
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