View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_6 (Length: 512)
Name: NF5183_low_6
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Complemental strand, 44998894 - 44998411
Alignment:
| Q |
14 |
actatacactactacacaacacaggaatctgactggtttcaagtcagagtcagattcagaagaagatagatccacatagatatgacgagaaagtacaaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998894 |
actatacactactacacaacacaggaatctgactggtttcaagtcagagtcagattcagaagaagatagatccacatagatatgacgagaaagtacaaca |
44998795 |
T |
|
| Q |
114 |
aattcaattgaaatatatatcaaaaatgttgttagggcatggtatagtataccttggtagggcatttctcaccgcgttccttagcaatggcttgaacctg |
213 |
Q |
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||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44998794 |
aattcaattaaaatatatatgaaaaatgttgttcgggcatggtatagtataccttggtagggcatttctcaccgcgttccttagcaattgcttgaacctg |
44998695 |
T |
|
| Q |
214 |
aatcaagaactcacgacattgttcatagagatgaaaaagataatctagaccgttctttttgccacgtgcaacttccccaggctctgtcacaatgaatgga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998694 |
aatcaagaactcacgacattgttcatagagatgaaaaagataatctagaccgttctttttgccacgtgcaacttccccaggctctgtcacaatgaatgga |
44998595 |
T |
|
| Q |
314 |
tgttctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatgatcaccatttcccttcatcttcatcc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998594 |
tgttctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatgatcaccatttcccttcatcttcatcc |
44998495 |
T |
|
| Q |
414 |
ttctcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtactccctcctccgcttcccaccgcct |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998494 |
ttctcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtactccctcctccgcttcccaccgcct |
44998411 |
T |
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