View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5183_low_9 (Length: 453)
Name: NF5183_low_9
Description: NF5183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5183_low_9 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 25 - 422
Target Start/End: Original strand, 33779267 - 33779663
Alignment:
| Q |
25 |
ttttttcgaatagggacgaaataattatgtatttgaaaagcgccaaaaaataaaactcttctatttgagggtgtatttttctcattttatggtggaaagt |
124 |
Q |
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| T |
33779267 |
ttttttcgaatagggacggaataattatgtatttgaaaagcgccaaaaaa-aaaactcttctatttgagggagtatttttctcattttatggtggaaagt |
33779365 |
T |
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| Q |
125 |
gagatgattctgactatttcaagttcaatgaaaatattcctattttgattaatcgtattatgaagttgttgaaaatgaattgacatgtgaaaatcaacta |
224 |
Q |
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| T |
33779366 |
gagatgattctgactatttcaagttcaatgaaaatattcctattttgattcatcgtattaggaagctgttgaaaatgaattgacatgtgaaaatcaacta |
33779465 |
T |
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| Q |
225 |
tatttggcaccaagaaaaatgagtgttgattaacttgcaaacattagcatttttgtcatcatttaaatttgtttgttttgaaaactccttcaagtgggat |
324 |
Q |
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| T |
33779466 |
tatttggcacaaagaaaaataagtgttgattaacttgcaaacattaacatttttgtcatcatttgaatttgtttgttttgaaaactccttcaagtggaat |
33779565 |
T |
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| Q |
325 |
gcaaaagcctctctttgaagatatttctagggcttatatgccttaaaatgttcatttaatttcataaattcaaagattttaccctctattccacccaa |
422 |
Q |
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| T |
33779566 |
gcaaaagcctctctttgaagatatttctagaatttatatgccttaaaatgttcgtttaatttcataaattccaagattttaccctctattctacccaa |
33779663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 278
Target Start/End: Original strand, 355976 - 356115
Alignment:
| Q |
140 |
atttcaagttcaatgaaaatattcctattttgattaatcgtattatgaagttgttgaaaatgaattgacatgtgaaaatcaactatatttggcaccaaga |
239 |
Q |
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| T |
355976 |
atttcaagtttaataggaatatccctattttagttcatcatattaggaagttgctgaaaatgaattaacatgtgcaaatcaactatatttgacccgaaga |
356075 |
T |
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| Q |
240 |
aaa-atgagtgttgattaacttgcaaacattagcattttt |
278 |
Q |
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| T |
356076 |
aaatacaagtgctgattaacttgctaactttagcgttttt |
356115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 41383171 - 41383204
Alignment:
| Q |
282 |
atcatttaaatttgtttgttttgaaaactccttc |
315 |
Q |
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| T |
41383171 |
atcatttaaatttgattgttttgaaaactccttc |
41383204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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