View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184-Insertion-1 (Length: 407)
Name: NF5184-Insertion-1
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 5081298 - 5081488
Alignment:
| Q |
8 |
agcatgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgtacacctttggacatggtacaaattttggtt |
107 |
Q |
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| T |
5081298 |
agcatgcagtttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaagattgcttagctcgtacacatttggacatggtacagattttggtt |
5081397 |
T |
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| Q |
108 |
tggtcatggatcaagtccaaagctaaagacttttaggaatcaatggagcactcaacctcttaaatgtctagaattgttatatgtaatgtga |
198 |
Q |
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| T |
5081398 |
tggtcatggatcaagtctaaagctaaagacttttaagaatcaatggagcactcaacctcttaaatgtctagaattgttatatgtaatgtga |
5081488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 345
Target Start/End: Original strand, 5081550 - 5081633
Alignment:
| Q |
262 |
aactttgtaacctttcgttcttaaaattcgttatagtttgatgatgttgtttataacatattatatttttaaccttaacctttt |
345 |
Q |
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| T |
5081550 |
aactttgtaacctttcgatcttagaattcgttatagtttgatgatgttgtttatgacatattatatttttaaccttaacctttt |
5081633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 50976723 - 50976591
Alignment:
| Q |
10 |
catgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgta-cacctttggacatggtacaaattttggttt |
108 |
Q |
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| T |
50976723 |
catgcatttggtcaatttagaagcaccgtaactttgtcatgtttggcaaccatgattgcttagctcgtaacacctttggacattgtacaacttttggttt |
50976624 |
T |
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| Q |
109 |
ggtcatggatcaagtccaaagctaaagactttt |
141 |
Q |
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| T |
50976623 |
ggtcgtggatcaagttcagagttaaagattttt |
50976591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 51079855 - 51079723
Alignment:
| Q |
10 |
catgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgta-cacctttggacatggtacaaattttggttt |
108 |
Q |
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||||||||| |||||||| |||||| |||||||||| |||| | ||| || |||||||||||||||| ||||||||||||| |||||| ||||||||| |
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| T |
51079855 |
catgcatttggtcaatttagaagcaccgtaactttgtcatgtttggcaaccatgattgcttagctcgtaacacctttggacattgtacaacttttggttt |
51079756 |
T |
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| Q |
109 |
ggtcatggatcaagtccaaagctaaagactttt |
141 |
Q |
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| T |
51079755 |
ggtcgtggatcaagttcagagttaaagattttt |
51079723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 15287006 - 15286972
Alignment:
| Q |
100 |
ttttggtttggtcatggatcaagtccaaagctaaa |
134 |
Q |
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| T |
15287006 |
ttttggtgtggtcatggatcaagtccaaagctaaa |
15286972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 28412652 - 28412566
Alignment:
| Q |
8 |
agcatgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgtacacctttggacatggt |
94 |
Q |
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| T |
28412652 |
agcatgtatttggacaatttggaagcatcctaattatgtggtgtttaataatcaggattgtttatctcgtacacctttggacatggt |
28412566 |
T |
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