View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184-Insertion-10 (Length: 370)
Name: NF5184-Insertion-10
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184-Insertion-10 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 41 - 370
Target Start/End: Complemental strand, 8978705 - 8978377
Alignment:
| Q |
41 |
ctaaggcggacggatatcaaacccgttttatatgggtccacctcctagcccttgcaaactaagattttcttagtatttggttatccgcttattttctctg |
140 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
8978705 |
ctaaggcggacggatatcaaacccgttctatatgggtccaccttctagcccttgcaaactaagattttcttagtatttagttatccgtttattttctctg |
8978606 |
T |
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| Q |
141 |
aggattttggcctagccctc-tcttatacataatattttctccttttttaataatatatatagagtaggtggtagcggacagaggttacagataggtgtc |
239 |
Q |
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|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
8978605 |
aggattttggcctagcccccctcttatacatattattttctccttttttaataatatatatagagtagatggtaacggacagaggttacagctaggtgtc |
8978506 |
T |
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| Q |
240 |
tacctagttagaatgtttttgtagcctcttaatgccctccctacttctttgcttatnnnnnnnnnnnnnnncacccacacacttctacacataagtatta |
339 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
8978505 |
aacctagttaggatgtttttgtagcctcttgatgccctccctacttctttgcttataaaaaaaaaaacactca--cacacacttctacacataagtatta |
8978408 |
T |
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| Q |
340 |
gttttcacttctgctttcgatgtattcctca |
370 |
Q |
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| T |
8978407 |
gttttcacttctgctttcgatgtattcctca |
8978377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 17116405 - 17116123
Alignment:
| Q |
8 |
cttacctcactaaatgtcagaggaagaaaattactaaggcggacggatatcaaacccgttttatatgggtccacctcctagcccttgcaaactaagattt |
107 |
Q |
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| T |
17116405 |
cttaccttactaaatgtcataggaagaagattactaaggcagccggatatcaaacccg--ttctatgggtccacctcctagcccttccaaa-tgagagtt |
17116309 |
T |
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| Q |
108 |
tc-ttagtatttggttatccgcttattttctctgaggattttggcctag-ccctctcttatacataatattttctccttt-tttaataat-atatataga |
203 |
Q |
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|| ||||||||||||| || |||||||||||| ||| ||||||||||| ||| ||||| |||| | ||||||||||||| ||| |||| ||||||||| |
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| T |
17116308 |
tctttagtatttggttgtctgcttattttctccaagggttttggcctagtccccctcttgtacacattattttctcctttattttttaataatatataga |
17116209 |
T |
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| Q |
204 |
gtaggtggtagcggacagaggttacagataggtgtctacctagttagaatgtttttgtagcctcttaatgccctccctacttcttt |
289 |
Q |
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| T |
17116208 |
gtagggggtagaggatgaaggttacaattggatgtcaacctagttggaatatttgtatagcctcttaattccctccctacttcttt |
17116123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 22912411 - 22912300
Alignment:
| Q |
183 |
ttttttaataatatatatagagtaggtggtagcggacagaggttacagataggtgtctacctagttagaatgtttttgtagcctcttaatgccctcccta |
282 |
Q |
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|||||||||||| |||||| |||||||||||| || ||||||| ||| |||||||| |||||||| | |||||||||| | |||| || | |||||| |
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| T |
22912411 |
ttttttaataatgtatataaagtaggtggtagatgatagaggtttcagttaggtgtcaacctagttgggatgtttttgttgtctctcgatactgtcccta |
22912312 |
T |
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| Q |
283 |
cttctttgctta |
294 |
Q |
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||||||| |||| |
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| T |
22912311 |
cttctttactta |
22912300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 17745542 - 17745477
Alignment:
| Q |
139 |
tgaggattttggcctag--ccctctcttatacataatattttctccttttttaataatatatatag |
202 |
Q |
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| T |
17745542 |
tgagggttttggcctagtcccccctcttgtacatattattttctccttttttaataatatatatag |
17745477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 19473815 - 19473722
Alignment:
| Q |
126 |
cgcttattttctctgaggattttggcctagccctc--tcttatacataatattttctcctttttt---aataatatatatagagtaggtggtag |
214 |
Q |
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|||||||| | ||||||||| |||||||||||| | |||| |||||| ||||||||| |||||| |||||||| ||||||||| ||||||| |
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| T |
19473815 |
cgcttattctttctgaggatcttggcctagccccccctcttgtacatattattttctcttttttttttaataatatttatagagtatgtggtag |
19473722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 26651998 - 26652075
Alignment:
| Q |
138 |
ctgaggattttggcctag--ccctctcttatacataatattttctccttttttaataatatatatagagtaggtggtag |
214 |
Q |
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| T |
26651998 |
ctgagggttttgccctagtcccccctcttgtacatattattttctc-ttttttgataatatatatagaataggtggtag |
26652075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 55693 - 55665
Alignment:
| Q |
172 |
atattttctccttttttaataatatatat |
200 |
Q |
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| T |
55693 |
atattttctccttttttaataatatatat |
55665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 29845282 - 29845314
Alignment:
| Q |
182 |
cttttttaataatatatatagagtaggtggtag |
214 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
29845282 |
cttttttaataatatatattgagtaggtggtag |
29845314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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