View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5184-Insertion-2 (Length: 1039)

Name: NF5184-Insertion-2
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5184-Insertion-2
NF5184-Insertion-2
[»] chr1 (7 HSPs)
chr1 (26-1039)||(6676328-6677339)
chr1 (905-953)||(20411699-20411747)
chr1 (905-956)||(7995503-7995555)
chr1 (905-955)||(27534823-27534874)
chr1 (905-953)||(15391198-15391247)
chr1 (905-938)||(24114641-24114674)
chr1 (905-953)||(29205411-29205460)
[»] chr4 (12 HSPs)
chr4 (901-949)||(26624040-26624089)
chr4 (905-956)||(8517399-8517451)
chr4 (899-953)||(12717063-12717118)
chr4 (905-946)||(626503-626544)
chr4 (901-951)||(46829529-46829580)
chr4 (905-953)||(477958-478007)
chr4 (905-953)||(20399849-20399898)
chr4 (905-953)||(24568659-24568708)
chr4 (905-953)||(25658293-25658342)
chr4 (905-953)||(29268723-29268772)
chr4 (905-953)||(38944094-38944143)
chr4 (905-953)||(44756988-44757037)
[»] chr2 (10 HSPs)
chr2 (899-937)||(13548863-13548901)
chr2 (905-953)||(11937804-11937853)
chr2 (905-953)||(32314568-32314617)
chr2 (905-956)||(41797720-41797772)
chr2 (905-953)||(4732196-4732245)
chr2 (905-953)||(9978615-9978664)
chr2 (905-953)||(25067978-25068027)
chr2 (905-953)||(34963022-34963071)
chr2 (905-953)||(38384403-38384452)
chr2 (901-938)||(38450359-38450396)
[»] chr7 (8 HSPs)
chr7 (905-953)||(1281083-1281132)
chr7 (905-953)||(37375977-37376026)
chr7 (905-953)||(6667521-6667570)
chr7 (905-953)||(10094567-10094616)
chr7 (905-953)||(21990788-21990837)
chr7 (905-953)||(24320169-24320218)
chr7 (905-953)||(42644798-42644847)
chr7 (905-953)||(46025975-46026024)
[»] chr8 (4 HSPs)
chr8 (905-952)||(24791123-24791171)
chr8 (899-953)||(1039848-1039903)
chr8 (905-953)||(39067643-39067692)
chr8 (905-953)||(43937131-43937180)
[»] chr3 (11 HSPs)
chr3 (901-937)||(534099-534135)
chr3 (905-952)||(36691754-36691802)
chr3 (903-952)||(3457063-3457113)
chr3 (901-951)||(33605194-33605243)
chr3 (905-953)||(14585588-14585637)
chr3 (905-953)||(22485091-22485140)
chr3 (905-953)||(30156235-30156284)
chr3 (905-953)||(31270452-31270501)
chr3 (905-953)||(33637529-33637578)
chr3 (905-953)||(40883820-40883869)
chr3 (905-953)||(49628049-49628098)
[»] scaffold0321 (1 HSPs)
scaffold0321 (905-953)||(7070-7119)
[»] scaffold0121 (1 HSPs)
scaffold0121 (905-953)||(13191-13240)
[»] chr6 (4 HSPs)
chr6 (905-953)||(6296195-6296244)
chr6 (905-953)||(6303005-6303054)
chr6 (905-953)||(6419804-6419853)
chr6 (884-937)||(15175915-15175968)
[»] chr5 (3 HSPs)
chr5 (901-953)||(374404-374457)
chr5 (905-953)||(11734765-11734814)
chr5 (905-953)||(17331454-17331503)


Alignment Details
Target: chr1 (Bit Score: 729; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 26 - 1039
Target Start/End: Original strand, 6676328 - 6677339
Alignment:
Q  26 ctcatgcaccatgctttgataggtgaaatgtgtaatatgaaccaataccaaatttctattctagagttgttctggaagcatattcgtatatataccaata 125  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     |||||||||||||||||||||||||||    ||||||    
T  6676328 ctcatgcaccatgctttgataggtgaaatgtgtaatataaaccaataccaaatttcta-----gagttgttctggaagcatattcgtata----ccaata 6676418  T
Q  126 cttgatgttgcagtgataattgtttaatctacgttacacttcagcttgttgatctctgatttcgtccaattgataaatggaatggaacgaatgataccta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6676419 cttgatgttgcagtgataattgtttaatctacgttacacttcagcttgttgatctctgatttcgtccagttgataaatggaatggaacgaatgataccta 6676518  T
Q  226 gatcatggatatgcacagctgcattactaatacatctaaatatttagcattgagaacacaaatgaatagggagttacgatatgcgacaagctcgcaaccc 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6676519 gatcatggatatgcacagctgcattactaatacatctaaatatttagctttgagaacacaaatgaatagggagttacgatatgcgacaagctcgcaacct 6676618  T
Q  326 tgtttttccaacg-tagcaacattgaatctccccaatattttgaacattgaaaccttcaagtattttatcccacttaaaccgatttatgcttttaccacc 424  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6676619 tgtttttccaatgttagcaacattgaatc-ccccaatattttgaacattgaaacctt-aagtattttatcccacttaaaccgatttatgcttttaccacc 6676716  T
Q  425 attttatttcaatcccagtaatacgaatttagcacgatctgtgataggatctaaatcctaccacaatggaaaaccatgaaaactattggaaactacggtt 524  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6676717 attttatttcaatcccagtaaaacgaatttagcacgatctgtgataggatctaaatcctaccacaatggaaaaccatgaaaactattggaaactacggtt 6676816  T
Q  525 gtaagctaaaatgataagagaatagaaactactagaaaataaaatacattttcattcatgttatatcaatttt-gactgaaatcatccctctcaattgtt 623  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||||    
T  6676817 ctaagctaaaatgacaagagaatagaaactactagaaaataaaatacattttcattcatgttatatcaattttggactgaaattatctctctaaattgtt 6676916  T
Q  624 tttctttctcttaaataaaagagtgatttgatttccatatattttcagctttctttgatatannnnnnngaattcttcatcttaacatatcgtttttata 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||  |||||||||||    
T  6676917 tttctttctcttaaataaaagagtgatttgatttccatatattttcagctttctttgatatttttttttgaattcttcgtcttaacaggtcgtttttata 6677016  T
Q  724 taattttatccaagtctcaattttattataatcttcatcattatcatttagtatgaattttggactgaaatcacctctctcaattgtttttctttctctt 823  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6677017 taattttatccaagtcttaattttattataatcttcatcattatcatttagtatgaattttggactgaaatcacctctctcaattgtttttctttctctt 6677116  T
Q  824 agttaaaagagtgatttccatatattttcagctttctttgatatgnnnnnnnngaattcttcgtc-taacaggttg-tatttattttgatttctcgtctt 921  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||| || |||||||| | |||||||||||||||||||||||    
T  6677117 agttaaaagagtgatttccatatattttcagctttctttgatatg-tttttttgaattcttcatcttaacaggtcgttatttattttgatttctcgtctt 6677215  T
Q  922 tatgcggtgtgtttttatttaccgtcttagtgtggcannnnnnnattga-gttgaaagattagg-ttgacc-agatctaatc-atga--ttgacgtcgtc 1015  Q
    ||| |||||||||||||||||||||||||||| ||||       ||||| |||||||||||||| |||||| |||||||||| ||||  |||||||||||    
T  6677216 tatacggtgtgtttttatttaccgtcttagtgcggcatttttttattgaggttgaaagattaggtttgaccaagatctaatcaatgattttgacgtcgtc 6677315  T
Q  1016 atcgttacggatccaaatgcatga 1039  Q
    ||| |||| |||| ||||| ||||    
T  6677316 atcattacagatcaaaatgtatga 6677339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 20411699 - 20411747
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgtttttatttaccgtcttagtg 953  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  20411699 ttttgatttctcgtctttgtgcggtgtgttttgatttcccgtcttagtg 20411747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 956
Target Start/End: Complemental strand, 7995555 - 7995503
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtgtgg 956  Q
    ||||||||| |||||||| |||||||||||||| |||| ||||||||||||||    
T  7995555 ttttgatttttcgtctttgtgcggtgtgtttttgatttcccgtcttagtgtgg 7995503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 905 - 955
Target Start/End: Original strand, 27534823 - 27534874
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtgtg 955  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||||    
T  27534823 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtgtg 27534874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 15391247 - 15391198
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  15391247 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 15391198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 938
Target Start/End: Complemental strand, 24114674 - 24114641
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttta 938  Q
    |||||||||||||||||| |||||||||||||||    
T  24114674 ttttgatttctcgtctttgtgcggtgtgttttta 24114641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 29205411 - 29205460
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  29205411 ttttgatttcacgtctttgtgcggtgtgtttttgatttcccgtcttagtg 29205460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 901 - 949
Target Start/End: Complemental strand, 26624089 - 26624040
Alignment:
Q  901 tttattttgatttctcgtctttatgcggtgtg-tttttatttaccgtctt 949  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  26624089 tttattttgatttctcgtctttatgcggtgtgctttttattttccgtctt 26624040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 905 - 956
Target Start/End: Complemental strand, 8517451 - 8517399
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtgtgg 956  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  8517451 ttttgatttctcgtctttatgaggtgtgtgttttatttcccgtcttagtgtgg 8517399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 899 - 953
Target Start/End: Complemental strand, 12717118 - 12717063
Alignment:
Q  899 tatttattttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    ||||| |||||||||||||||||| |||||||||||||| |||| |||||||||||    
T  12717118 tatttgttttgatttctcgtctttgtgcggtgtgtttttgattttccgtcttagtg 12717063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 946
Target Start/End: Complemental strand, 626544 - 626503
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgtttttatttaccgt 946  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  626544 ttttgatttctcgtctttgtgcggtgtgtttttatttcccgt 626503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 951
Target Start/End: Original strand, 46829529 - 46829580
Alignment:
Q  901 tttattttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttag 951  Q
    |||||||||||||| |||||||||| |||||| ||||||||| |||||||||    
T  46829529 tttattttgatttcacgtctttatgtggtgtgttttttattttccgtcttag 46829580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 478007 - 477958
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  478007 ttttgatttcccgtctttgtgcggtgtgttttttatttcccgtcttagtg 477958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 20399898 - 20399849
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  20399898 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 20399849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 24568708 - 24568659
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  24568708 ttttgatttcccgtctttgtgcggtgtgttttttattttccgtcttagtg 24568659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 25658293 - 25658342
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| ||||||||| ||||||||| |||||||||||    
T  25658293 ttttgatttcacgtctttgtgcggtgtgttttttatttgccgtcttagtg 25658342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 29268772 - 29268723
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  29268772 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 29268723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 38944143 - 38944094
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  38944143 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 38944094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 44757037 - 44756988
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||||||||||| |||||||||||||| |||| || ||||||||    
T  44757037 ttttgatttctcgtctttgtgcggtgtgtttttgattttccatcttagtg 44756988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 899 - 937
Target Start/End: Complemental strand, 13548901 - 13548863
Alignment:
Q  899 tatttattttgatttctcgtctttatgcggtgtgttttt 937  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  13548901 tatttattttgatttctcgtctttgtgcggtgtgttttt 13548863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 11937853 - 11937804
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||||    
T  11937853 ttttgatttctcgtctttgtgcggtgtgtttttgatttcccgtcttagtg 11937804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 32314568 - 32314617
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttagtg 953  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  32314568 ttttgatttctcgtctttgtgcggtgtgttttttatttcccgtcttagtg 32314617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 956
Target Start/End: Original strand, 41797720 - 41797772
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtgtgg 956  Q
    |||||||||| ||||||| |||||||||||||| |||| ||||||||||||||    
T  41797720 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtgtgg 41797772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 4732196 - 4732245
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  4732196 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 4732245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 9978664 - 9978615
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  9978664 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 9978615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 25067978 - 25068027
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| ||||||||| ||||||||| |||||||||||    
T  25067978 ttttgatttcccgtctttgtgcggtgtgttttttatttcccgtcttagtg 25068027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 34963071 - 34963022
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  34963071 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 34963022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 38384452 - 38384403
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  38384452 ttttgatttcccgtctttgtgcggtgtgttttttattttccgtcttagtg 38384403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 901 - 938
Target Start/End: Original strand, 38450359 - 38450396
Alignment:
Q  901 tttattttgatttctcgtctttatgcggtgtgttttta 938  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  38450359 tttattttgatttatcgtctttgtgcggtgtgttttta 38450396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 1281132 - 1281083
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||||    
T  1281132 ttttgatttctcgtctttgtgcggtgtgtttttgatttcccgtcttagtg 1281083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 37376026 - 37375977
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  37376026 ttttgatttctcgtctttgtgcggtgtgttttttattttccgtcttagtg 37375977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 6667521 - 6667570
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| ||||||||| ||||||||| |||||||||||    
T  6667521 ttttgatttcccgtctttgtgcggtgtgttttttattttccgtcttagtg 6667570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 10094567 - 10094616
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  10094567 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 10094616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 21990788 - 21990837
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  21990788 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 21990837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 24320218 - 24320169
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  24320218 ttttgatttcccgtctttctgcggtgtgttttttattttccgtcttagtg 24320169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 42644798 - 42644847
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| ||||||||| ||||||||| |||||||||||    
T  42644798 ttttgatttcccgtctttgtgcggtgtgttttttattttccgtcttagtg 42644847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 46026024 - 46025975
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  46026024 ttttgatttcccgtctttgtgcggtgtgttttttatttcccgtcttagtg 46025975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 952
Target Start/End: Complemental strand, 24791171 - 24791123
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagt 952  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  24791171 ttttgatttctcgtctttgtgcggtgtgtttttaatttcccgtcttagt 24791123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 899 - 953
Target Start/End: Complemental strand, 1039903 - 1039848
Alignment:
Q  899 tatttattttgatttctcgtctttatgcggtgt-gtttttatttaccgtcttagtg 953  Q
    ||||| |||||||||||||||||| ||||||||  ||||||||| |||||||||||    
T  1039903 tatttgttttgatttctcgtctttgtgcggtgtattttttatttcccgtcttagtg 1039848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 39067692 - 39067643
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttagtg 953  Q
    |||||||||| |||||||||||| |||| ||||||||| |||||||||||    
T  39067692 ttttgatttcccgtctttatgcgttgtgttttttattttccgtcttagtg 39067643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 43937180 - 43937131
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  43937180 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 43937131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 901 - 937
Target Start/End: Original strand, 534099 - 534135
Alignment:
Q  901 tttattttgatttctcgtctttatgcggtgtgttttt 937  Q
    |||||||||||||||||||||| ||||||||||||||    
T  534099 tttattttgatttctcgtctttgtgcggtgtgttttt 534135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 952
Target Start/End: Complemental strand, 36691802 - 36691754
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagt 952  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  36691802 ttttgatttcccgtctttatgcggtgtgttttttattttccgtcttagt 36691754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 903 - 952
Target Start/End: Original strand, 3457063 - 3457113
Alignment:
Q  903 tattttgatttctcgtctttatgcggtgtg-tttttatttaccgtcttagt 952  Q
    |||||||||||| ||||||| ||||||||| ||||||||| ||||||||||    
T  3457063 tattttgatttcccgtctttgtgcggtgtgttttttatttcccgtcttagt 3457113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 951
Target Start/End: Complemental strand, 33605243 - 33605194
Alignment:
Q  901 tttattttgatttctcgtctttatgcggtgtgtttttatttaccgtcttag 951  Q
    |||||||||||||||||||||| |||||||| ||||||||| || ||||||    
T  33605243 tttattttgatttctcgtctttgtgcggtgt-tttttattttccctcttag 33605194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 14585588 - 14585637
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  14585588 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 14585637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 22485091 - 22485140
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  22485091 ttttgatttcccgtctttgtgcggtgtgtttttgattttccgtcttagtg 22485140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 30156284 - 30156235
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  30156284 ttttgatttcccgtctttgtgcggtgtgttttttatttcccgtcttagtg 30156235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 31270452 - 31270501
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  31270452 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 31270501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 33637529 - 33637578
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  33637529 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 33637578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 40883869 - 40883820
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  40883869 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 40883820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 49628098 - 49628049
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||  |||||||||||||||||||||| |||| |||||||||||    
T  49628098 ttttgattttccgtctttatgcggtgtgtttttgatttcccgtcttagtg 49628049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 7119 - 7070
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||||||||||| |||||||||||||| |||| |||||| ||||    
T  7119 ttttgatttctcgtctttgtgcggtgtgtttttgatttcccgtctaagtg 7070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 13240 - 13191
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  13240 ttttgatttcccgtctttgtgcggtgtgttttttatttcccgtcttagtg 13191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 6296244 - 6296195
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  6296244 ttttgatttcccgtctttgtgcggtgtgttttttattttccgtcttagtg 6296195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 6303054 - 6303005
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  6303054 ttttgatttcccgtctttgtgcggtgtgttttttattttccgtcttagtg 6303005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 6419853 - 6419804
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgt-ttttatttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  6419853 ttttgatttcccgtctttgtgcggtgtgttttttatttcccgtcttagtg 6419804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 937
Target Start/End: Original strand, 15175915 - 15175968
Alignment:
Q  884 tcgtctaacaggttgtatttattttgatttctcgtctttatgcggtgtgttttt 937  Q
    |||||||||| | | | |||||||||||||| ||||||| ||||||||||||||    
T  15175915 tcgtctaacatgctttgtttattttgatttcacgtctttgtgcggtgtgttttt 15175968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 901 - 953
Target Start/End: Original strand, 374404 - 374457
Alignment:
Q  901 tttattttgatttctcgtctttatgcggtgt-gtttttatttaccgtcttagtg 953  Q
    ||||||||||||||| |||||||||||||||  ||||||||| | |||||||||    
T  374404 tttattttgatttctagtctttatgcggtgtattttttattttctgtcttagtg 374457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Complemental strand, 11734814 - 11734765
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  11734814 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 11734765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 905 - 953
Target Start/End: Original strand, 17331454 - 17331503
Alignment:
Q  905 ttttgatttctcgtctttatgcggtgtgttttt-atttaccgtcttagtg 953  Q
    |||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  17331454 ttttgatttcccgtctttgtgcggtgtgtttttgatttcccgtcttagtg 17331503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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