View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5184-Insertion-3 (Length: 687)

Name: NF5184-Insertion-3
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5184-Insertion-3
NF5184-Insertion-3
[»] chr3 (5 HSPs)
chr3 (270-309)||(30315442-30315481)
chr3 (270-308)||(19373718-19373756)
chr3 (270-308)||(36844722-36844760)
chr3 (270-302)||(38141082-38141114)
chr3 (270-302)||(40717656-40717688)
[»] chr6 (9 HSPs)
chr6 (270-308)||(9940780-9940818)
chr6 (270-302)||(32193942-32193974)
chr6 (270-308)||(3988726-3988764)
chr6 (270-308)||(13011330-13011368)
chr6 (270-308)||(17552229-17552267)
chr6 (270-308)||(20226203-20226241)
chr6 (270-308)||(22120187-22120225)
chr6 (273-302)||(12322872-12322901)
chr6 (270-303)||(21271390-21271423)
[»] chr4 (3 HSPs)
chr4 (270-308)||(10573141-10573179)
chr4 (270-300)||(47458381-47458411)
chr4 (269-302)||(52162235-52162268)
[»] chr2 (10 HSPs)
chr2 (270-308)||(10195807-10195845)
chr2 (270-308)||(37038752-37038790)
chr2 (270-308)||(11188232-11188270)
chr2 (270-300)||(27726410-27726440)
chr2 (270-308)||(33056023-33056061)
chr2 (270-308)||(34455824-34455862)
chr2 (270-303)||(18719420-18719453)
chr2 (270-302)||(8540171-8540203)
chr2 (270-298)||(9391586-9391614)
chr2 (270-298)||(36685734-36685762)
[»] chr1 (8 HSPs)
chr1 (270-308)||(7191187-7191225)
chr1 (270-308)||(8894996-8895034)
chr1 (270-308)||(26595050-26595088)
chr1 (270-300)||(5111-5141)
chr1 (270-308)||(25560853-25560891)
chr1 (270-308)||(27209121-27209159)
chr1 (270-308)||(28538337-28538375)
chr1 (270-308)||(31699270-31699308)
[»] chr7 (4 HSPs)
chr7 (270-303)||(28289347-28289380)
chr7 (273-308)||(21819418-21819453)
chr7 (270-308)||(40339591-40339629)
chr7 (270-298)||(34012589-34012617)
[»] chr8 (4 HSPs)
chr8 (270-308)||(515009-515047)
chr8 (270-300)||(9812305-9812335)
chr8 (270-300)||(13496370-13496400)
chr8 (270-308)||(15750312-15750350)
[»] chr5 (8 HSPs)
chr5 (270-308)||(843150-843188)
chr5 (270-308)||(11977720-11977758)
chr5 (270-308)||(13974406-13974444)
chr5 (270-308)||(34534491-34534529)
chr5 (273-302)||(28591611-28591640)
chr5 (270-303)||(38370004-38370037)
chr5 (270-302)||(7721227-7721259)
chr5 (270-298)||(36165019-36165047)
[»] scaffold0983 (1 HSPs)
scaffold0983 (270-302)||(675-707)


Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 30315442 - 30315481
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattctc 309  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  30315442 ttgattaggataatttggtaaaataacatctctctttctc 30315481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 19373718 - 19373756
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  19373718 ttgattaggagaatttggtaaaataacatctctctttct 19373756  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 36844760 - 36844722
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  36844760 ttgattaggataatttggtaaaataatatctctctttct 36844722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 38141082 - 38141114
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctct 302  Q
    |||||||| ||||||||||||||||||||||||    
T  38141082 ttgattagaataatttggtaaaataacatctct 38141114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 40717688 - 40717656
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctct 302  Q
    ||||||| |||||||||||||||||||||||||    
T  40717688 ttgattaagataatttggtaaaataacatctct 40717656  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 9940780 - 9940818
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  9940780 ttgattaggataatttggtaaaataacatctctctttct 9940818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 32193942 - 32193974
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctct 302  Q
    |||||||||||||||||||||||||||||||||    
T  32193942 ttgattaggataatttggtaaaataacatctct 32193974  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 3988764 - 3988726
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  3988764 ttgattatgataatttggtaaaataacatctctctttct 3988726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 13011368 - 13011330
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  13011368 ttgattaagataatttggtaaaataacatctctctttct 13011330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 17552267 - 17552229
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  17552267 ttgattaggataatttggtaaaattacatctctctttct 17552229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 20226241 - 20226203
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  20226241 ttgattagtataatttggtaaaataacatctctctttct 20226203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 22120225 - 22120187
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  22120225 ttgattagtataatttggtaaaataacatctctctttct 22120187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 302
Target Start/End: Complemental strand, 12322901 - 12322872
Alignment:
Q  273 attaggataatttggtaaaataacatctct 302  Q
    ||||||||||||||||||||||||||||||    
T  12322901 attaggataatttggtaaaataacatctct 12322872  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 21271423 - 21271390
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctc 303  Q
    |||||||||||| |||||||||||||||||||||    
T  21271423 ttgattaggatactttggtaaaataacatctctc 21271390  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 10573179 - 10573141
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  10573179 ttgattaggataatttggtaaaataacatctctctttct 10573141  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 300
Target Start/End: Complemental strand, 47458411 - 47458381
Alignment:
Q  270 ttgattaggataatttggtaaaataacatct 300  Q
    |||||||||||||||||||||||||||||||    
T  47458411 ttgattaggataatttggtaaaataacatct 47458381  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 52162235 - 52162268
Alignment:
Q  269 tttgattaggataatttggtaaaataacatctct 302  Q
    |||||||| |||||||||||||||||||||||||    
T  52162235 tttgattaagataatttggtaaaataacatctct 52162268  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 10195807 - 10195845
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  10195807 ttgattaggataatttggtaaaataacatctctctttct 10195845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 37038790 - 37038752
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  37038790 ttgattaggataatttggtaaaataacatctctctttct 37038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 11188270 - 11188232
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  11188270 ttgattaggataacttggtaaaataacatctctctttct 11188232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 300
Target Start/End: Complemental strand, 27726440 - 27726410
Alignment:
Q  270 ttgattaggataatttggtaaaataacatct 300  Q
    |||||||||||||||||||||||||||||||    
T  27726440 ttgattaggataatttggtaaaataacatct 27726410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 33056023 - 33056061
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  33056023 ttgattatgataatttggtaaaataacatctctctttct 33056061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 34455824 - 34455862
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  34455824 ttgattaggataatttggtaaaagaacatctctctttct 34455862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 18719453 - 18719420
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctc 303  Q
    |||||||||||||||||||||||||||| |||||    
T  18719453 ttgattaggataatttggtaaaataacacctctc 18719420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 8540171 - 8540203
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctct 302  Q
    ||||||||||||||||| |||||||||||||||    
T  8540171 ttgattaggataatttgataaaataacatctct 8540203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 9391614 - 9391586
Alignment:
Q  270 ttgattaggataatttggtaaaataacat 298  Q
    |||||||||||||||||||||||||||||    
T  9391614 ttgattaggataatttggtaaaataacat 9391586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 36685762 - 36685734
Alignment:
Q  270 ttgattaggataatttggtaaaataacat 298  Q
    |||||||||||||||||||||||||||||    
T  36685762 ttgattaggataatttggtaaaataacat 36685734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 7191225 - 7191187
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  7191225 ttgattaggataatttggtaaaataacatctctctttct 7191187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 8895034 - 8894996
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  8895034 ttgattaggataatttggtaaaataacatctctctttct 8894996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 26595088 - 26595050
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  26595088 ttgattaggataatttggtaaaataacatctctctttct 26595050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 300
Target Start/End: Original strand, 5111 - 5141
Alignment:
Q  270 ttgattaggataatttggtaaaataacatct 300  Q
    |||||||||||||||||||||||||||||||    
T  5111 ttgattaggataatttggtaaaataacatct 5141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 25560891 - 25560853
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  25560891 ttgattatgataatttggtaaaataacatctctctttct 25560853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 27209121 - 27209159
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  27209121 ttgattaggataatttggtaaaataacatatctctttct 27209159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 28538337 - 28538375
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  28538337 ttgattatgataatttggtaaaataacatctctctttct 28538375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 31699308 - 31699270
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  31699308 ttgattatgataatttggtaaaataacatctctctttct 31699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 28289347 - 28289380
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctc 303  Q
    ||||||||||||||||||||||||||||||||||    
T  28289347 ttgattaggataatttggtaaaataacatctctc 28289380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 21819418 - 21819453
Alignment:
Q  273 attaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||||||||||||||||||||| ||||    
T  21819418 attaggataatttggtaaaataacatctctctttct 21819453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 40339591 - 40339629
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  40339591 ttgattaggataatttggtaaaataacatttctctttct 40339629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 298
Target Start/End: Original strand, 34012589 - 34012617
Alignment:
Q  270 ttgattaggataatttggtaaaataacat 298  Q
    |||||||||||||||||||||||||||||    
T  34012589 ttgattaggataatttggtaaaataacat 34012617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 515009 - 515047
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  515009 ttgattaggataatttgctaaaataacatctctctttct 515047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 300
Target Start/End: Original strand, 9812305 - 9812335
Alignment:
Q  270 ttgattaggataatttggtaaaataacatct 300  Q
    |||||||||||||||||||||||||||||||    
T  9812305 ttgattaggataatttggtaaaataacatct 9812335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 300
Target Start/End: Original strand, 13496370 - 13496400
Alignment:
Q  270 ttgattaggataatttggtaaaataacatct 300  Q
    |||||||||||||||||||||||||||||||    
T  13496370 ttgattaggataatttggtaaaataacatct 13496400  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 15750350 - 15750312
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  15750350 ttgattaggataatttggtaaaataatatctctctttct 15750312  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 843150 - 843188
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  843150 ttgattaggataatttggtaaaataacatatctccttct 843188  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 11977720 - 11977758
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  11977720 ttgattaggataatttggtaaaacaacatctctctttct 11977758  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 13974406 - 13974444
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  13974406 ttgattaggataatttggtaaaataacacctctctttct 13974444  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 34534491 - 34534529
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctcattct 308  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  34534491 ttgattaggataatttggtaaaataatatctctctttct 34534529  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 302
Target Start/End: Complemental strand, 28591640 - 28591611
Alignment:
Q  273 attaggataatttggtaaaataacatctct 302  Q
    ||||||||||||||||||||||||||||||    
T  28591640 attaggataatttggtaaaataacatctct 28591611  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 38370004 - 38370037
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctctc 303  Q
    ||||||||||||||||||||||||||||| ||||    
T  38370004 ttgattaggataatttggtaaaataacatatctc 38370037  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 7721227 - 7721259
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctct 302  Q
    ||||||||||||||||| |||||||||||||||    
T  7721227 ttgattaggataatttgttaaaataacatctct 7721259  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 298
Target Start/End: Original strand, 36165019 - 36165047
Alignment:
Q  270 ttgattaggataatttggtaaaataacat 298  Q
    |||||||||||||||||||||||||||||    
T  36165019 ttgattaggataatttggtaaaataacat 36165047  T

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Target: scaffold0983 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 707 - 675
Alignment:
Q  270 ttgattaggataatttggtaaaataacatctct 302  Q
    ||||||| |||||||||||||||||||||||||    
T  707 ttgattaagataatttggtaaaataacatctct 675  T

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