View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184-Insertion-4 (Length: 475)
Name: NF5184-Insertion-4
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 68 - 475
Target Start/End: Complemental strand, 41707905 - 41707494
Alignment:
| Q |
68 |
aatggcagatgtgattttctttggtctaaggtcactattgttagagatacaatagtaaaatgtgatattcatgctagaaactgatttgacgaatgacaga |
167 |
Q |
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| T |
41707905 |
aatggcagatgtgattttccttggtctaaggtcactattgttagagatacaatagtaaaatgtgatattcatgctagaaactgatttgacgaatgacaga |
41707806 |
T |
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| Q |
168 |
aggaaataatgtcaaaactttccctagggaggggggaaccacttgaaaatttcatggatctcacatttccatgctttccctcatttaaaatttaaatc-- |
265 |
Q |
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| T |
41707805 |
aggaaataatgtcaaaactttccctagggaggggggaaccacttgaaaatttcatggacctcacatttccatgctttccctcatttaaaatttaaatctt |
41707706 |
T |
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| Q |
266 |
tgtgttaaacttcctattccttcctcatacttcatttttcttctgttcttcgcattttggtctccttcgcgtcc-tccttccaacattcattgtaattcc |
364 |
Q |
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| T |
41707705 |
tgtgttaaacttcctattccttcctcatacttcatttttcttctgttcttcgcattttggtctcctccccgtccttccttccaacattcattgtaattcc |
41707606 |
T |
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| Q |
365 |
atcatcatccctctcatttatttgtctctttattccttcctttaatttatggtgtaattttctaatacactatgcaattttactttta-ttatcataatt |
463 |
Q |
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| T |
41707605 |
atcatcatccctctcatttatttgtctttttattccttcctttaatttatggtgtaattttctaatacactatgcaattttacttttatttatcataatt |
41707506 |
T |
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| Q |
464 |
atagttaatagt |
475 |
Q |
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| T |
41707505 |
atagttaatagt |
41707494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 41708087 - 41708021
Alignment:
| Q |
8 |
ataaatgctatggtagatttctagtttgcttggcagatgtgatttttgtgggtgtaaaggaatggca |
74 |
Q |
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| T |
41708087 |
ataaatgctatggtagatttctagtttgcttggcagatgtgatttttgtgggtgtaaaggaatggca |
41708021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 41717422 - 41717384
Alignment:
| Q |
435 |
tatgcaattttacttttattatcataattatagttaata |
473 |
Q |
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| T |
41717422 |
tatgcaattttacatttattatcataattatagttaata |
41717384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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