View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5184-Insertion-5 (Length: 321)

Name: NF5184-Insertion-5
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5184-Insertion-5
NF5184-Insertion-5
[»] chr2 (4 HSPs)
chr2 (8-321)||(38582901-38583216)
chr2 (143-321)||(38608082-38608260)
chr2 (148-321)||(38564931-38565106)
chr2 (159-321)||(38616405-38616567)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 38583216 - 38582901
Alignment:
Q  8 aataaacattattcatgtgtagatcactacttttgacgttcaataaacctcttttcagccattttctagtggnnnnnnnn--ctagactttaaaaatatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  38583216 aataaacattattcatgtgtagatcactacttttgacgttcaataaacctcttttcagccattttctagtggaaaaaaaaaactagactttaaaaatatg 38583117  T
Q  106 attcaccaagggtaccaaaaatcttataaccaaccctgatacatatatttatgcttcatcaaggatttggtaaactcatggttactatagaatctagaag 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38583116 attcaccaagggtaccaaaaatcttataaccgaccctgatacaaatatttatgcttcatcaaggatttggtaaactcatggttactatagaatctagaag 38583017  T
Q  206 ctcccaactctcacttccaatttcaagatcccacaataaaggccctgtttcctcatcgctcatcgatccattcacaaatgctttcaatctctgacttatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38583016 ctcccaactctcacttccaatttcaagatcccacaataaaggccctgtttccacatcgctcatcgatccattcacaaatgctttcaatctctgacttatt 38582917  T
Q  306 ttcattgctccaaatt 321  Q
    ||||||||||||||||    
T  38582916 ttcattgctccaaatt 38582901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 38608260 - 38608082
Alignment:
Q  143 gatacatatatttatgcttcatcaaggatttggtaaactcatggttactatagaatctagaagctcccaactctcacttccaatttcaagatcccacaat 242  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38608260 gatacataaatctatgcttcatcaaggatttggtaaactcttggttactacagaatgtagaagctcccaactctcacttccaatttcaagatcccacaat 38608161  T
Q  243 aaaggccctgtttcctcatcgctcatcgatccattcacaaatgctttcaatctctgacttattttcattgctccaaatt 321  Q
    | |||| |||||||| |||| ||||  ||||| |||||||||||||||||||||| |||||||||  || |||||||||    
T  38608160 agaggctctgtttccacatcactcacagatccgttcacaaatgctttcaatctctcacttattttggtttctccaaatt 38608082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 148 - 321
Target Start/End: Complemental strand, 38565106 - 38564931
Alignment:
Q  148 atatatttatgcttcatcaaggattt--ggtaaactcatggttactatagaatctagaagctcccaactctcacttccaatttcaagatcccacaataaa 245  Q
    |||||| |||||||||||||||||||  ||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||  |    
T  38565106 atatatctatgcttcatcaaggatttatggtaaactcttggttactacagaatgtagaagctcccaagtctcacttccaatttcaagatcccacaattga 38565007  T
Q  246 ggccctgtttcctcatcgctcatcgatccattcacaaatgctttcaatctctgacttattttcattgctccaaatt 321  Q
    ||  |||||||| |||||||||| ||||| | |||||| |||||||||||||  ||||||||  || |||||||||    
T  38565006 ggatctgtttccacatcgctcatggatccgtccacaaacgctttcaatctcttgcttattttggtttctccaaatt 38564931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 321
Target Start/End: Original strand, 38616405 - 38616567
Alignment:
Q  159 cttcatcaaggatttggtaaactcatggttactatagaatctagaagctcccaactctcacttccaatttcaagatcccacaataaaggccctgtttcct 258  Q
    |||||| |||||||||| |||||| ||||||| | | | | ||||||||||||||||||||||||||||||||||||||||| |  ||   ||||||||     
T  38616405 cttcattaaggatttggcaaactcttggttaccacatagtgtagaagctcccaactctcacttccaatttcaagatcccacacttgagattctgtttcca 38616504  T
Q  259 catcgctcatcgatccattcacaaatgctttcaatctctgacttattttcattgctccaaatt 321  Q
    |||||||||| ||||| ||||||||  ||||||| |||| |||||||||  ||||||||||||    
T  38616505 catcgctcatggatccgttcacaaactctttcaacctctcacttattttggttgctccaaatt 38616567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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