View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5184-Insertion-7 (Length: 332)

Name: NF5184-Insertion-7
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5184-Insertion-7
NF5184-Insertion-7
[»] chr3 (28 HSPs)
chr3 (8-330)||(4764011-4764323)
chr3 (114-306)||(4669910-4670102)
chr3 (292-330)||(32546645-32546683)
chr3 (292-330)||(53785559-53785597)
chr3 (233-273)||(2832067-2832107)
chr3 (59-173)||(10481098-10481216)
chr3 (233-273)||(20846835-20846875)
chr3 (233-273)||(51660683-51660723)
chr3 (283-326)||(52741735-52741778)
chr3 (296-330)||(44687-44721)
chr3 (112-174)||(51194726-51194788)
chr3 (236-269)||(4280652-4280685)
chr3 (290-323)||(39661411-39661444)
chr3 (112-173)||(52632607-52632668)
chr3 (232-268)||(21562917-21562953)
chr3 (240-272)||(22472753-22472785)
chr3 (240-272)||(26758591-26758623)
chr3 (233-264)||(44651332-44651363)
chr3 (292-330)||(44198617-44198655)
chr3 (112-173)||(2565842-2565903)
chr3 (112-153)||(10744603-10744644)
chr3 (112-177)||(17144284-17144349)
chr3 (237-273)||(22255983-22256019)
chr3 (292-324)||(26276460-26276492)
chr3 (233-273)||(38651711-38651751)
chr3 (117-177)||(44651429-44651489)
chr3 (237-273)||(45629553-45629589)
chr3 (237-273)||(55467328-55467364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (233-273)||(428006-428046)
[»] chr7 (38 HSPs)
chr7 (292-332)||(21327055-21327095)
chr7 (292-330)||(25187150-25187188)
chr7 (292-329)||(32682023-32682060)
chr7 (232-273)||(36550825-36550866)
chr7 (232-273)||(47646442-47646483)
chr7 (293-330)||(48539286-48539323)
chr7 (237-273)||(6879783-6879819)
chr7 (233-273)||(11399482-11399522)
chr7 (233-273)||(27456688-27456728)
chr7 (233-273)||(33435342-33435382)
chr7 (233-272)||(32238031-32238070)
chr7 (292-330)||(45614061-45614099)
chr7 (232-273)||(1812840-1812881)
chr7 (293-330)||(4501110-4501147)
chr7 (236-273)||(23410903-23410940)
chr7 (291-328)||(27521320-27521357)
chr7 (293-330)||(45974818-45974855)
chr7 (233-273)||(524550-524590)
chr7 (292-328)||(982799-982835)
chr7 (233-272)||(2734686-2734726)
chr7 (233-273)||(16535430-16535470)
chr7 (233-273)||(16630192-16630232)
chr7 (233-273)||(43202775-43202815)
chr7 (292-328)||(43334052-43334088)
chr7 (291-330)||(22197836-22197875)
chr7 (291-330)||(22239946-22239985)
chr7 (87-173)||(43202885-43202974)
chr7 (293-327)||(19277142-19277176)
chr7 (292-330)||(19837068-19837106)
chr7 (292-330)||(24527434-24527472)
chr7 (234-264)||(48643156-48643186)
chr7 (112-173)||(27100149-27100210)
chr7 (112-173)||(27178093-27178154)
chr7 (87-166)||(1812962-1813044)
chr7 (295-327)||(5972438-5972470)
chr7 (237-273)||(7697652-7697688)
chr7 (87-166)||(26208808-26208888)
chr7 (294-330)||(42295396-42295432)
[»] chr6 (16 HSPs)
chr6 (233-273)||(12108261-12108301)
chr6 (233-273)||(32190365-32190405)
chr6 (233-273)||(892025-892065)
chr6 (292-330)||(45840-45878)
chr6 (295-332)||(2135021-2135058)
chr6 (240-273)||(19134792-19134825)
chr6 (237-273)||(16971441-16971477)
chr6 (292-328)||(34562398-34562434)
chr6 (233-272)||(28633305-28633344)
chr6 (112-177)||(6267470-6267535)
chr6 (237-270)||(13092360-13092393)
chr6 (140-177)||(15837268-15837305)
chr6 (237-273)||(22414169-22414206)
chr6 (112-177)||(22414277-22414342)
chr6 (112-177)||(30753036-30753101)
chr6 (237-273)||(9686409-9686445)
[»] chr5 (33 HSPs)
chr5 (233-273)||(42920720-42920760)
chr5 (236-273)||(22553718-22553755)
chr5 (237-273)||(31075306-31075342)
chr5 (112-173)||(2796372-2796433)
chr5 (112-173)||(2802533-2802594)
chr5 (292-329)||(15292245-15292282)
chr5 (236-273)||(23418329-23418366)
chr5 (232-269)||(32721087-32721124)
chr5 (292-329)||(42921548-42921585)
chr5 (292-324)||(15507566-15507598)
chr5 (112-176)||(40692912-40692976)
chr5 (233-273)||(41805506-41805546)
chr5 (296-330)||(14423545-14423579)
chr5 (112-166)||(18846003-18846057)
chr5 (292-330)||(26212802-26212840)
chr5 (292-330)||(32270015-32270053)
chr5 (233-271)||(38147474-38147512)
chr5 (116-177)||(1681666-1681727)
chr5 (237-273)||(2796509-2796545)
chr5 (237-273)||(2802670-2802706)
chr5 (233-269)||(6633668-6633704)
chr5 (237-273)||(10090590-10090626)
chr5 (236-264)||(11402967-11402995)
chr5 (86-177)||(23418435-23418529)
chr5 (233-273)||(26690169-26690209)
chr5 (233-273)||(26959901-26959941)
chr5 (241-273)||(36568075-36568107)
chr5 (233-273)||(38176162-38176202)
chr5 (233-273)||(38203386-38203426)
chr5 (293-325)||(38875494-38875526)
chr5 (232-275)||(40331162-40331206)
chr5 (233-273)||(40692817-40692857)
chr5 (237-265)||(41455242-41455270)
[»] chr4 (26 HSPs)
chr4 (233-273)||(18536342-18536382)
chr4 (292-330)||(30940951-30940989)
chr4 (293-330)||(40392773-40392810)
chr4 (232-273)||(41260469-41260510)
chr4 (232-269)||(46471791-46471828)
chr4 (237-273)||(20986760-20986796)
chr4 (233-273)||(48338704-48338744)
chr4 (292-332)||(53170363-53170403)
chr4 (233-268)||(5122063-5122098)
chr4 (291-330)||(16955309-16955348)
chr4 (232-275)||(35014633-35014676)
chr4 (292-330)||(600911-600949)
chr4 (115-177)||(48685220-48685282)
chr4 (236-273)||(14867127-14867164)
chr4 (233-269)||(3666751-3666787)
chr4 (237-273)||(41325756-41325792)
chr4 (233-273)||(51907412-51907452)
chr4 (236-273)||(4689041-4689078)
chr4 (237-273)||(27743561-27743598)
chr4 (233-273)||(32222996-32223034)
chr4 (112-173)||(41260590-41260651)
chr4 (87-177)||(54273446-54273540)
chr4 (233-273)||(6102248-6102287)
chr4 (233-273)||(18399384-18399424)
chr4 (237-273)||(29233110-29233146)
chr4 (233-273)||(41312354-41312394)
[»] chr1 (35 HSPs)
chr1 (233-273)||(9249772-9249812)
chr1 (232-273)||(23474784-23474825)
chr1 (87-171)||(25559535-25559622)
chr1 (292-328)||(19035329-19035365)
chr1 (237-273)||(26344734-26344770)
chr1 (233-273)||(36203131-36203171)
chr1 (233-273)||(39166882-39166922)
chr1 (237-273)||(52380420-52380456)
chr1 (295-330)||(7213096-7213131)
chr1 (293-330)||(868620-868657)
chr1 (293-330)||(1114087-1114124)
chr1 (293-330)||(21472854-21472891)
chr1 (240-273)||(35979963-35979996)
chr1 (240-273)||(35992286-35992319)
chr1 (233-273)||(3532708-3532748)
chr1 (237-273)||(6248434-6248470)
chr1 (233-273)||(8269006-8269046)
chr1 (233-273)||(18310327-18310367)
chr1 (233-269)||(18834243-18834279)
chr1 (298-330)||(22346751-22346783)
chr1 (237-273)||(40094852-40094888)
chr1 (232-268)||(44056099-44056135)
chr1 (293-328)||(31737543-31737578)
chr1 (292-323)||(45835411-45835442)
chr1 (296-330)||(24177730-24177764)
chr1 (292-330)||(28041346-28041384)
chr1 (291-328)||(7151777-7151814)
chr1 (112-157)||(10847073-10847118)
chr1 (236-273)||(11537193-11537230)
chr1 (233-273)||(21685234-21685275)
chr1 (292-329)||(29170404-29170441)
chr1 (233-269)||(9330763-9330799)
chr1 (237-273)||(12973928-12973964)
chr1 (233-272)||(13056217-13056257)
chr1 (237-273)||(25559705-25559741)
[»] chr8 (20 HSPs)
chr8 (293-332)||(18804464-18804503)
chr8 (292-330)||(18596818-18596856)
chr8 (293-330)||(500093-500130)
chr8 (291-332)||(1187409-1187450)
chr8 (233-273)||(9012517-9012557)
chr8 (294-330)||(24124880-24124916)
chr8 (292-330)||(22589555-22589593)
chr8 (237-273)||(1271494-1271530)
chr8 (233-273)||(28441830-28441870)
chr8 (233-268)||(27674885-27674920)
chr8 (236-275)||(38926092-38926131)
chr8 (233-271)||(12073902-12073940)
chr8 (237-273)||(24681773-24681810)
chr8 (237-273)||(4785601-4785637)
chr8 (236-272)||(12659954-12659990)
chr8 (14-58)||(14549785-14549829)
chr8 (233-273)||(15452348-15452388)
chr8 (233-273)||(18755006-18755046)
chr8 (232-264)||(40436807-40436839)
chr8 (244-272)||(44024508-44024536)
[»] scaffold0009 (1 HSPs)
scaffold0009 (292-330)||(102956-102994)
[»] scaffold0688 (4 HSPs)
scaffold0688 (233-270)||(1537-1574)
scaffold0688 (233-270)||(8106-8143)
scaffold0688 (233-273)||(3128-3167)
scaffold0688 (233-273)||(4795-4834)
[»] chr2 (26 HSPs)
chr2 (232-273)||(41166515-41166556)
chr2 (293-330)||(42122668-42122705)
chr2 (292-328)||(1472345-1472381)
chr2 (233-273)||(36964347-36964387)
chr2 (295-330)||(3208463-3208498)
chr2 (292-330)||(17344488-17344526)
chr2 (233-271)||(17763109-17763147)
chr2 (292-330)||(18745173-18745211)
chr2 (293-330)||(2248493-2248530)
chr2 (291-332)||(2886833-2886874)
chr2 (293-330)||(13413202-13413239)
chr2 (236-273)||(34572633-34572670)
chr2 (293-330)||(41868126-41868163)
chr2 (293-329)||(4413286-4413322)
chr2 (292-324)||(5536699-5536731)
chr2 (233-273)||(15320272-15320312)
chr2 (292-328)||(15515368-15515404)
chr2 (292-328)||(20143166-20143202)
chr2 (233-273)||(22014321-22014360)
chr2 (233-269)||(31719762-31719798)
chr2 (87-177)||(12041114-12041207)
chr2 (233-273)||(13194263-13194305)
chr2 (291-325)||(4849674-4849708)
chr2 (291-325)||(34360366-34360400)
chr2 (233-273)||(1536945-1536986)
chr2 (233-273)||(11051088-11051128)
[»] scaffold0204 (2 HSPs)
scaffold0204 (233-273)||(26226-26266)
scaffold0204 (233-269)||(14889-14925)
[»] scaffold0148 (1 HSPs)
scaffold0148 (292-332)||(33100-33140)
[»] scaffold0664 (1 HSPs)
scaffold0664 (236-273)||(6342-6379)
[»] scaffold0309 (1 HSPs)
scaffold0309 (293-330)||(5175-5212)
[»] scaffold0075 (1 HSPs)
scaffold0075 (293-330)||(13310-13347)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 4764323 - 4764011
Alignment:
Q  8 gattagggtgttaaaaactgaatcaacccaatagaaaatctgtaaaccaaataatcaaaatctaaaccgtaataaatatatttggttgggatatattcgg 107  Q
    |||||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4764323 gattagggtgttaaaaaccgaatcaacccaatagaa----------ccaaataatcaaaatctaaaccgtaataaatgtatttggttgggatatattcgg 4764234  T
Q  108 atcattttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaaaatnnnnnnnccgctaattaaacatatttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  4764233 atcattttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaaaataaaaaaaccgctaattaaacatatttc 4764134  T
Q  208 acttagattaaaactcgtataaagtttttataaaatgacatattttttctcttgttaagtttcttcatccaaaattattttcaaatatataaaccattat 307  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4764133 acttagactaaaactcgtataaagtttttataaaatgacatattttttctcttgttaagtttcttcatccaaaattattttcaaatatataaaccattat 4764034  T
Q  308 ttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||    
T  4764033 ttacacttgaatagaaggcaagc 4764011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 114 - 306
Target Start/End: Complemental strand, 4670102 - 4669910
Alignment:
Q  114 ttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaaaatnnnnnnnccgctaattaaacatatttcacttag 213  Q
    |||||| |||| |||||||||||| ||||| |||||||||||||  ||||||| |||||||||| ||        |  ||||||||| ||| |||||||     
T  4670102 ttactccactgcatggtttgttttgatttgcggtttttattttattaaccaaatcaaaccgcaacataagaaaaacaataattaaacttatgtcacttaa 4670003  T
Q  214 attaaaactcgtataaagtttttataaaatgacatat-tttttctcttgttaagtttcttcatccaaaattattttcaaatatataaaccatta 306  Q
    | ||| |||| |||||| |||| |||||||||||||| ||||||||||| ||||||||||  |||||||||||| |||||||||||||||||||    
T  4670002 actaatactcatataaactttt-ataaaatgacatatatttttctcttgataagtttcttgttccaaaattattctcaaatatataaaccatta 4669910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 32546645 - 32546683
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32546645 atatataaaccattatttacacttgaatagaaggcaagc 32546683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 53785559 - 53785597
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53785559 atatataaaccattatttacacttgaatagaaggcaagc 53785597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 2832067 - 2832107
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  2832067 ttttataaaatgacattttttttctcttgttaagtttcttc 2832107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 10481098 - 10481216
Alignment:
Q  59 taatcaaaatctaaaccgtaataaat-atatttggttgggatatattcggatcatttta---ctcaactgtatggtttgttttaatttgtggtttttatt 154  Q
    ||||||||||| |||| | || |||| |||||||||| |||| |||| |||||| ||||   |||||| |||||||||| ||| ||||| ||||||||||    
T  10481098 taatcaaaatcgaaactgcaaaaaatcatatttggtttggatgtatttggatcactttattactcaaccgtatggtttgatttgatttgcggtttttatt 10481197  T
Q  155 ttagcaaccaaaacaaacc 173  Q
    ||| ||||| || ||||||    
T  10481198 ttatcaaccgaaccaaacc 10481216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 20846875 - 20846835
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  20846875 ttttataaaatgacatattttttctcttgtaaagtttcttc 20846835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 51660683 - 51660723
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  51660683 ttttataaaatgacatattttttctcttgataagtttcttc 51660723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 52741778 - 52741735
Alignment:
Q  283 tattttcaaatatataaaccattatttacacttgaatagaaggc 326  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  52741778 tattttgatatatataaaccattatttacacttgaatagaaggc 52741735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 44687 - 44721
Alignment:
Q  296 ataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||    
T  44687 ataaaccattatttacacttgaatagaaggcaagc 44721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 51194788 - 51194726
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccg 174  Q
    |||||||||| ||||||||||| |||| |||  ||||||||||||||||||| || |||||||    
T  51194788 ttttactcaattgtatggtttggtttagtttacggtttttattttagcaaccgaaccaaaccg 51194726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 4280685 - 4280652
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagttt 269  Q
    ||||||||||||||||||||||||||||||||||    
T  4280685 tataaaatgacatattttttctcttgttaagttt 4280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 39661444 - 39661411
Alignment:
Q  290 aaatatataaaccattatttacacttgaatagaa 323  Q
    ||||||||||||||||||||||||||||||||||    
T  39661444 aaatatataaaccattatttacacttgaatagaa 39661411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 52632668 - 52632607
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    ||||||||||||| |||||||| |||  |||| ||||||||||||| |||||||| ||||||    
T  52632668 ttttactcaactgcatggtttggtttggtttgcggtttttattttaccaaccaaaccaaacc 52632607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 21562953 - 21562917
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtt 268  Q
    ||||||| |||||||||||||||||||||||||||||    
T  21562953 tttttatgaaatgacatattttttctcttgttaagtt 21562917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 22472753 - 22472785
Alignment:
Q  240 aaatgacatattttttctcttgttaagtttctt 272  Q
    |||||||||||||||||||||||||||||||||    
T  22472753 aaatgacatattttttctcttgttaagtttctt 22472785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 26758623 - 26758591
Alignment:
Q  240 aaatgacatattttttctcttgttaagtttctt 272  Q
    |||||||||||||||||||||||||||||||||    
T  26758623 aaatgacatattttttctcttgttaagtttctt 26758591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 264
Target Start/End: Complemental strand, 44651363 - 44651332
Alignment:
Q  233 ttttataaaatgacatattttttctcttgtta 264  Q
    ||||||||||||||||||||||||||||||||    
T  44651363 ttttataaaatgacatattttttctcttgtta 44651332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 44198617 - 44198655
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  44198617 atatataaattattatttacacttgaatagaaggcaagc 44198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 2565842 - 2565903
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    ||||||||||||| |||||||| ||   |||| |||||| |||||| |||||||||||||||    
T  2565842 ttttactcaactggatggtttggttcggtttgcggttttgattttaccaaccaaaacaaacc 2565903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 10744603 - 10744644
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttat 153  Q
    |||||||||||||||||||||| ||| ||||| |||||||||    
T  10744603 ttttactcaactgtatggtttgatttgatttgcggtttttat 10744644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 17144284 - 17144349
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    |||||||||||  ||||||||| |||  |||| ||||||||||||| |||||||| ||||| ||||    
T  17144284 ttttactcaaccatatggtttggtttggtttgcggtttttattttatcaaccaaaccaaactgcaa 17144349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 22255983 - 22256019
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||  |||||||||||||||||||||||||||    
T  22255983 ataaaatgttatattttttctcttgttaagtttcttc 22256019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 26276460 - 26276492
Alignment:
Q  292 atatataaaccattatttacacttgaatagaag 324  Q
    |||||||||||||||||||||||||||| ||||    
T  26276460 atatataaaccattatttacacttgaattgaag 26276492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 38651711 - 38651751
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||| ||||||||||||||||||||  |||||||    
T  38651711 ttttataaaattacatattttttctcttgttagatttcttc 38651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 44651489 - 44651429
Alignment:
Q  117 ctcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    |||||| | |||||||| ||| |||||||||||| |||||| ||||| || ||||||||||    
T  44651489 ctcaaccgcatggtttggtttgatttgtggttttcattttaccaaccgaaccaaaccgcaa 44651429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 45629589 - 45629553
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||| | |||||||||||||||    
T  45629589 ataaaatgacatattttttattttgttaagtttcttc 45629553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 55467328 - 55467364
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||| |||||||| |||||||||||||||    
T  55467328 ataaaatgacatgttttttcttttgttaagtttcttc 55467364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 428046 - 428006
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  428046 ttttataaaatgacatattttttctcttgttaagtttcttc 428006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 21327095 - 21327055
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagcag 332  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21327095 atatataaaccattatttacacttgaatagaaggcaagcag 21327055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 25187188 - 25187150
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25187188 atatataaaccattatttacacttgaatagaaggcaagc 25187150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 32682060 - 32682023
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaag 329  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32682060 atatataaaccattatttacacttgaatagaaggcaag 32682023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 36550866 - 36550825
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  36550866 tttttataaaatgacatattttttctcttgttaagcttcttc 36550825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 47646442 - 47646483
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  47646442 ttttaataaaatgacatattttttctcttgttaagtttcttc 47646483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 48539323 - 48539286
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48539323 tatataaaccattatttacacttgaatagaaggcaagc 48539286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 6879783 - 6879819
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||    
T  6879783 ataaaatgacatattttttctcttgttaagtttcttc 6879819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 11399522 - 11399482
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  11399522 ttttataaaatgacatattttgtctcttgttaagtttcttc 11399482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 27456728 - 27456688
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  27456728 ttttgtaaaatgacatattttttctcttgttaagtttcttc 27456688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 33435382 - 33435342
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  33435382 ttttataaaatgacatgttttttctcttgttaagtttcttc 33435342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 32238070 - 32238031
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttctt 272  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  32238070 ttttataaaatgacatattttttctcttgtcaagtttctt 32238031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 45614099 - 45614061
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  45614099 atatataaaccattatttacagttgaatagaaggcaagc 45614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 1812881 - 1812840
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  1812881 ttttaataaaatgacatattttttctcttgttgagtttcttc 1812840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 4501110 - 4501147
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||| |||||||||    
T  4501110 tatataaaccattatttacacttgaatataaggcaagc 4501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 23410903 - 23410940
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||| |||||||||||||||||||||||||||    
T  23410903 tataaaatgaaatattttttctcttgttaagtttcttc 23410940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 27521320 - 27521357
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaaggcaa 328  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  27521320 aatatataaaccattatttacacttgaatggaaggcaa 27521357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 45974855 - 45974818
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||| |||||    
T  45974855 tatataaaccattatttacacttgaatagaagacaagc 45974818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 524550 - 524590
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  524550 ttttataaaataacatattttttctattgttaagtttcttc 524590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 982799 - 982835
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaa 328  Q
    ||||||||||||||||||| |||||||||||||||||    
T  982799 atatataaaccattatttaaacttgaatagaaggcaa 982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 2734726 - 2734686
Alignment:
Q  233 ttttataaaatgacatatttttt-ctcttgttaagtttctt 272  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  2734726 ttttataaaatgacatatttttttctcttgttaagtttctt 2734686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 16535430 - 16535470
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  16535430 ttttttaaaatgacatattttttctcttgataagtttcttc 16535470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 16630232 - 16630192
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  16630232 ttttttaaaatgacatattttttctcttgataagtttcttc 16630192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 43202815 - 43202775
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  43202815 ttttatataataacatattttttctcttgttaagtttcttc 43202775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 43334088 - 43334052
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaa 328  Q
    |||||||||||||||||||||||||||||||| ||||    
T  43334088 atatataaaccattatttacacttgaatagaatgcaa 43334052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 22197836 - 22197875
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  22197836 aatatataaaccattatttactcttgaatagaagacaagc 22197875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 22239985 - 22239946
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  22239985 aatatataaaccattatttactcttgaatagaagacaagc 22239946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 43202974 - 43202885
Alignment:
Q  87 atttggttgggatatattcggatca---ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    |||||||| | |||||||| |||||   ||||||||||  | |||||||| |||  |||||||||||||||||| |||||||| ||||||    
T  43202974 atttggtttgcatatattcagatcacttttttactcaatcgcatggtttggtttggtttgtggtttttattttaccaaccaaaccaaacc 43202885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 19277142 - 19277176
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggca 327  Q
    |||||||||||||||||||| ||||||||||||||    
T  19277142 tatataaaccattatttacatttgaatagaaggca 19277176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 19837068 - 19837106
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  19837068 atatataaaccattatttaaacttaaatagaaggcaagc 19837106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 24527434 - 24527472
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  24527434 atatataaatcattatttacacttgaataaaaggcaagc 24527472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 48643186 - 48643156
Alignment:
Q  234 tttataaaatgacatattttttctcttgtta 264  Q
    |||||||||||||||||||||||||||||||    
T  48643186 tttataaaatgacatattttttctcttgtta 48643156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 27100149 - 27100210
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    ||||||||||| |||||||||| |||  |||| |||||| |||||| |||||||| ||||||    
T  27100149 ttttactcaaccgtatggtttggtttggtttgcggttttgattttaccaaccaaaccaaacc 27100210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 27178154 - 27178093
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    ||||||||||| |||||||||| |||  |||| |||||| |||||| |||||||| ||||||    
T  27178154 ttttactcaaccgtatggtttggtttggtttgcggttttgattttaccaaccaaaccaaacc 27178093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 1813044 - 1812962
Alignment:
Q  87 atttggttgggatatattcggatc---attttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaa 166  Q
    |||||||| |||||||||||||||   |||||||||||| | || ||||| || | |||| |||||| |||||| ||||||||    
T  1813044 atttggttcggatatattcggatcattattttactcaaccgcatagtttggttcagtttgcggttttgattttaccaaccaaa 1812962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 5972470 - 5972438
Alignment:
Q  295 tataaaccattatttacacttgaatagaaggca 327  Q
    ||||||| |||||||||||||||||||||||||    
T  5972470 tataaactattatttacacttgaatagaaggca 5972438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 7697688 - 7697652
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||| |||||||||||||| |||||||||||||||    
T  7697688 ataaaaagacatattttttctattgttaagtttcttc 7697652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 26208808 - 26208888
Alignment:
Q  87 atttggttgggatatattcggatca-ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaa 166  Q
    |||||||| | || ||||||||| | ||||||||||| | |||||||| || | ||||||| |||||||||| ||||||||    
T  26208808 atttggtttgaatgtattcggataaattttactcaaccgcatggtttggttcagtttgtggattttattttaccaaccaaa 26208888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 42295432 - 42295396
Alignment:
Q  294 atataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||| | |||||||||||||||||    
T  42295432 atataaaccattatttatatttgaatagaaggcaagc 42295396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 12108261 - 12108301
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12108261 ttttataaaatgacatattttttctcttgttaagtttcttc 12108301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 32190365 - 32190405
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32190365 ttttataaaatgacatattttttctcttgttaagtttcttc 32190405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 892025 - 892065
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  892025 ttttataaaatgacatgttttttctcttgttaagtttcttc 892065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 45878 - 45840
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  45878 atatataaaccattatttacacttgaataggaggcaagc 45840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 2135058 - 2135021
Alignment:
Q  295 tataaaccattatttacacttgaatagaaggcaagcag 332  Q
    |||||||||||||||||| |||||||||||||||||||    
T  2135058 tataaaccattatttacaattgaatagaaggcaagcag 2135021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 19134792 - 19134825
Alignment:
Q  240 aaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||||||||||    
T  19134792 aaatgacatattttttctcttgttaagtttcttc 19134825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 16971441 - 16971477
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16971441 ataaaatgacatattttttcttttgttaagtttcttc 16971477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 34562434 - 34562398
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaa 328  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34562434 atatataaactattatttacacttgaatagaaggcaa 34562398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 28633344 - 28633305
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttctt 272  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  28633344 ttttataaaatgaagtattttttctcttgttaagtttctt 28633305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 6267535 - 6267470
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    ||||||||||| | |||||||| |||  |||| |||||||||||||  ||||||| ||||||||||    
T  6267535 ttttactcaaccgcatggtttggtttggtttgcggtttttattttaaaaaccaaaccaaaccgcaa 6267470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 13092393 - 13092360
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttc 270  Q
    ||||||||||||| ||||||||||||||||||||    
T  13092393 ataaaatgacataatttttctcttgttaagtttc 13092360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 15837268 - 15837305
Alignment:
Q  140 tttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    |||||||||||||||||||||||| || ||||||||||    
T  15837268 tttgtggtttttattttagcaaccgaaccaaaccgcaa 15837305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 22414206 - 22414169
Alignment:
Q  237 ataaaatgacatatttttt-ctcttgttaagtttcttc 273  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22414206 ataaaatgacatatttttttctcttgttaagtttcttc 22414169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 22414342 - 22414277
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    ||||||||||||| |||||||| ||  |||||||||||| ||||||  |||| || ||||||||||    
T  22414342 ttttactcaactgcatggtttggttcgatttgtggttttcattttacgaaccgaaccaaaccgcaa 22414277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 30753101 - 30753036
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    ||||||||||||| || ||||| || | |||| ||||||||||||| ||||| || ||||||||||    
T  30753101 ttttactcaactgcatagtttggttcagtttgcggtttttattttaccaaccgaaccaaaccgcaa 30753036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 9686445 - 9686409
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||| | |||||||||||||||||||||||||||    
T  9686445 ataaaataaaatattttttctcttgttaagtttcttc 9686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 42920720 - 42920760
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42920720 ttttataaaatgacatattttttctcttgttaagtttcttc 42920760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 22553755 - 22553718
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22553755 tataaaatgacatattttttctcttgttaagtttcttc 22553718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 31075306 - 31075342
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||    
T  31075306 ataaaatgacatattttttctcttgttaagtttcttc 31075342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 2796372 - 2796433
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    ||||||| ||| | ||||||||||| | |||||||||||||||||| |||||||| ||||||    
T  2796372 ttttacttaaccgcatggtttgtttcagtttgtggtttttattttaccaaccaaatcaaacc 2796433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 2802533 - 2802594
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    ||||||| ||| | ||||||||||| | |||||||||||||||||| |||||||| ||||||    
T  2802533 ttttacttaaccgcatggtttgtttcagtttgtggtttttattttaccaaccaaatcaaacc 2802594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 15292282 - 15292245
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaag 329  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15292282 atatataaaccattatttatacttgaatagaaggcaag 15292245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 23418366 - 23418329
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23418366 tataaactgacatattttttctcttgttaagtttcttc 23418329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 32721087 - 32721124
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagttt 269  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  32721087 tttttataaaatgacatatattttctcttgttaagttt 32721124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 42921548 - 42921585
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaag 329  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  42921548 atatataaatcattatttacacttgaatagaaggcaag 42921585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 15507598 - 15507566
Alignment:
Q  292 atatataaaccattatttacacttgaatagaag 324  Q
    |||||||||||||||||||||||||||||||||    
T  15507598 atatataaaccattatttacacttgaatagaag 15507566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 40692976 - 40692912
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgca 176  Q
    |||||||||||  ||||||||| |||| |||  ||||||||||||| |||||||| |||||||||    
T  40692976 ttttactcaaccttatggtttggtttagtttacggtttttattttaccaaccaaaccaaaccgca 40692912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 41805506 - 41805546
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  41805506 ttttataaaatgacacattttttctcttgataagtttcttc 41805546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 14423545 - 14423579
Alignment:
Q  296 ataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||| |||||||||    
T  14423545 ataaaccattatttacacttgaataaaaggcaagc 14423579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 18846057 - 18846003
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaa 166  Q
    |||||||||||  ||||||||| ||||||||  ||||||||||||| ||||||||    
T  18846057 ttttactcaaccatatggtttggtttaatttacggtttttattttaccaaccaaa 18846003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 26212840 - 26212802
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  26212840 atatataaatcattatttacacttgaatagaaagcaagc 26212802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 32270053 - 32270015
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  32270053 atatataaaatattatttacacttgaatagaaggcaagc 32270015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 38147512 - 38147474
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttct 271  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  38147512 ttttataaaatgatatattttttctcttgttaaatttct 38147474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 1681727 - 1681666
Alignment:
Q  116 actcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    ||||||| |||||||||| |||| ||||  |||||||||||||||||  || ||||||||||    
T  1681727 actcaaccgtatggtttgatttagtttgcagtttttattttagcaactgaaccaaaccgcaa 1681666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 2796509 - 2796545
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||| |||||||||||||||||| |||||||    
T  2796509 ataaaatgacgtattttttctcttgttaaatttcttc 2796545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 2802670 - 2802706
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||| |||||||||||||||||| |||||||    
T  2802670 ataaaatgacgtattttttctcttgttaaatttcttc 2802706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 6633704 - 6633668
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagttt 269  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  6633704 ttttataaaatgacatattttttctgttgataagttt 6633668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 10090626 - 10090590
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||| |||||||||||||| |||||||||    
T  10090626 ataaaatgacatcttttttctcttgttgagtttcttc 10090590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 11402995 - 11402967
Alignment:
Q  236 tataaaatgacatattttttctcttgtta 264  Q
    |||||||||||||||||||||||||||||    
T  11402995 tataaaatgacatattttttctcttgtta 11402967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 23418529 - 23418435
Alignment:
Q  86 tatttggttgggatatattcggatcatttta---ctcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    ||||||||| |||||||||||||||||||||   |||||| |  ||||||| ||   |||| ||||||||||||| | ||| || ||||||||||    
T  23418529 tatttggttcggatatattcggatcattttattactcaaccgcgtggtttggttcggtttgaggtttttattttaccgaccgaaccaaaccgcaa 23418435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 26690209 - 26690169
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  26690209 ttttaaaaattgatatattttttctcttgttaagtttcttc 26690169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 26959941 - 26959901
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  26959941 ttttaaaaattgatatattttttctcttgttaagtttcttc 26959901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 36568107 - 36568075
Alignment:
Q  241 aatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||| |||||    
T  36568107 aatgacatattttttctcttgttaagtgtcttc 36568075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 38176162 - 38176202
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||  ||||||| |||||||    
T  38176162 ttttataaaatgacatattttttcagttgttaaatttcttc 38176202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 38203386 - 38203426
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||  ||||||| |||||||    
T  38203386 ttttataaaatgacatattttttcagttgttaaatttcttc 38203426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 38875494 - 38875526
Alignment:
Q  293 tatataaaccattatttacacttgaatagaagg 325  Q
    |||||||| ||||||||||||||||||||||||    
T  38875494 tatataaatcattatttacacttgaatagaagg 38875526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 40331162 - 40331206
Alignment:
Q  232 tttttataaaatgacatatttttt-ctcttgttaagtttcttcat 275  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||    
T  40331162 tttttttaaaatgacatatttttttctcctgttaagtttcttcat 40331206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 40692857 - 40692817
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||| |||||||| |||| |||||||||||    
T  40692857 ttttataaaatgacacattttttcgcttggtaagtttcttc 40692817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 41455270 - 41455242
Alignment:
Q  237 ataaaatgacatattttttctcttgttaa 265  Q
    |||||||||||||||||||||||||||||    
T  41455270 ataaaatgacatattttttctcttgttaa 41455242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 18536342 - 18536382
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18536342 ttttataaaatgacatattttttctcttgttaagtttcttc 18536382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 30940989 - 30940951
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30940989 atatataaaccattatttacacttgaatagaaggcaagc 30940951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 40392810 - 40392773
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40392810 tatataaaccattatttacacttgaatagaaggcaagc 40392773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 41260510 - 41260469
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  41260510 tttttataaaatgacatattttttctcttgtaaagtttcttc 41260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 46471828 - 46471791
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagttt 269  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46471828 tttttataaaatgacatattttttctcttgttaagttt 46471791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 20986796 - 20986760
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||    
T  20986796 ataaaatgacatattttttctcttgttaagtttcttc 20986760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 48338744 - 48338704
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  48338744 ttttataaaatgacatattttttctattgttaagtttcttc 48338704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 53170363 - 53170403
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagcag 332  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  53170363 atatataaaccattatttacatttgaatagaaggcaagcag 53170403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 5122063 - 5122098
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtt 268  Q
    ||||||||||||||||||||||||||||||||||||    
T  5122063 ttttataaaatgacatattttttctcttgttaagtt 5122098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 16955309 - 16955348
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  16955309 aatatataaaccattatttacacttgagtagaaggcaagc 16955348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 35014676 - 35014633
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtttcttcat 275  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  35014676 tttttataaagtgacatatattttctcttgttaagtttcttcat 35014633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 600949 - 600911
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  600949 atatataaacaattatttacacttgaatagaaggcaagc 600911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 48685282 - 48685220
Alignment:
Q  115 tactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    ||||||| ||||||||||| ||| ||||| ||||||||||||| ||||| || ||||||||||    
T  48685282 tactcaattgtatggtttggtttgatttgcggtttttattttaccaaccgaatcaaaccgcaa 48685220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 14867164 - 14867127
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14867164 tataaaatgacatattatttctcttgttaagtttcttc 14867127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 3666751 - 3666787
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagttt 269  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3666751 ttttataaaatgatatattttttctcttgttaagttt 3666787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 41325792 - 41325756
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||| |||||||||||||||    
T  41325792 ataaaatgacatattttttcttttgttaagtttcttc 41325756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 51907452 - 51907412
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  51907452 ttttataaaatgacacattttttcgcttgttaagtttcttc 51907412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 4689078 - 4689041
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  4689078 tataaaatgatatattttttctcttgttaattttcttc 4689041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 27743598 - 27743561
Alignment:
Q  237 ataaaatgacatatttttt-ctcttgttaagtttcttc 273  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  27743598 ataaaatgacatatttttttctcttgttaagtttcttc 27743561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 32222996 - 32223034
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  32222996 ttttataaaatgacatattttt--tcttgttaagtttcttc 32223034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 41260651 - 41260590
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaacc 173  Q
    ||||||||||| | |||||| | || |||||||||||||||||||| ||||| || ||||||    
T  41260651 ttttactcaaccgcatggttcggttcaatttgtggtttttattttaccaaccgaatcaaacc 41260590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 54273446 - 54273540
Alignment:
Q  87 atttggttgggatatattcggatcatttt----actcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    |||||||| |||| |||||||||||||||    ||||||| | ||| || | |||  |||| ||||||||||||||||||| || ||||||||||    
T  54273446 atttggttcggatgtattcggatcattttttttactcaaccgcatgattcggtttggtttgcggtttttattttagcaaccgaaccaaaccgcaa 54273540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 6102287 - 6102248
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  6102287 ttttataaaatgacat-ttttttctcgtgttaagtttcttc 6102248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 18399424 - 18399384
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||| ||||||||||||||||  ||||||||||||||||    
T  18399424 ttttatgaaatgacatattttttgacttgttaagtttcttc 18399384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 29233146 - 29233110
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||  |||||||||||||||    
T  29233146 ataaaatgacatattttttcctttgttaagtttcttc 29233110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 41312354 - 41312394
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||| ||||||||||||||||| ||||||| |||||||    
T  41312354 ttttatagaatgacatattttttctattgttaaatttcttc 41312394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 9249772 - 9249812
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9249772 ttttataaaatgacatattttttctcttgttaagtttcttc 9249812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 23474784 - 23474825
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  23474784 tttttataaaatgacatattttttctcttgttaattttcttc 23474825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 25559535 - 25559622
Alignment:
Q  87 atttggttgggatatattcggatcatttt---actcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaa 171  Q
    |||||||| ||||||||||||||||||||   ||||||| |||||||||| ||   ||||||||||| |||||| |||||||| ||||    
T  25559535 atttggttcggatatattcggatcatttttttactcaaccgtatggtttggttcggtttgtggttttgattttaccaaccaaaccaaa 25559622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 19035329 - 19035365
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaa 328  Q
    |||||||||||||||||||||||||||||||||||||    
T  19035329 atatataaaccattatttacacttgaatagaaggcaa 19035365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 26344734 - 26344770
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||    
T  26344734 ataaaatgacatattttttctcttgttaagtttcttc 26344770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 36203131 - 36203171
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  36203131 ttttataaaatgacatatttgttctcttgttaagtttcttc 36203171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 39166882 - 39166922
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  39166882 ttttatagaatgacatattttttctcttgttaagtttcttc 39166922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 52380420 - 52380456
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||||    
T  52380420 ataaaatgacatattttttctcttgttaagtttcttc 52380456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 7213096 - 7213131
Alignment:
Q  295 tataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||||||||    
T  7213096 tataaaccattatttacacttgaatagaaggcaagc 7213131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 868657 - 868620
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  868657 tatataaacaattatttacacttgaatagaaggcaagc 868620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 1114124 - 1114087
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1114124 tatataaaccattatttacacttgaatagaagccaagc 1114087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 21472854 - 21472891
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  21472854 tatataaaccattatttacacttgaatagaatgcaagc 21472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 35979963 - 35979996
Alignment:
Q  240 aaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||||||||||    
T  35979963 aaatgacatattttttctcttgttaagtttcttc 35979996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 35992286 - 35992319
Alignment:
Q  240 aaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||||||||||||    
T  35992286 aaatgacatattttttctcttgttaagtttcttc 35992319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 3532708 - 3532748
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  3532708 ttttataaaatgacatattttttatcttgttaactttcttc 3532748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 6248470 - 6248434
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6248470 ataaaatgacatatttttcctcttgttaagtttcttc 6248434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 8269046 - 8269006
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  8269046 ttttataaaatgacatatattttcttttgttaagtttcttc 8269006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 18310367 - 18310327
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  18310367 ttttataaaatgacatgttttttctcttgataagtttcttc 18310327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 18834243 - 18834279
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagttt 269  Q
    ||||||||||||||||||||||||||||| |||||||    
T  18834243 ttttataaaatgacatattttttctcttgataagttt 18834279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 22346751 - 22346783
Alignment:
Q  298 aaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||    
T  22346751 aaaccattatttacacttgaatagaaggcaagc 22346783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 40094852 - 40094888
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40094852 ataaaatgacatattatttctcttgttaagtttcttc 40094888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 44056135 - 44056099
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtt 268  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44056135 tttttataaaatgatatattttttctcttgttaagtt 44056099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 31737578 - 31737543
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaa 328  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31737578 tatataaacaattatttacacttgaatagaaggcaa 31737543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 292 - 323
Target Start/End: Complemental strand, 45835442 - 45835411
Alignment:
Q  292 atatataaaccattatttacacttgaatagaa 323  Q
    ||||||||||||||||||||||||||||||||    
T  45835442 atatataaaccattatttacacttgaatagaa 45835411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 24177764 - 24177730
Alignment:
Q  296 ataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||| |||||    
T  24177764 ataaaccattatttacacttgaatagaagacaagc 24177730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 28041384 - 28041346
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  28041384 atatataaaccattatttacacttaaatagaagacaagc 28041346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 7151814 - 7151777
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaaggcaa 328  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  7151814 aatatataaaccattatttacatttgaatagaaagcaa 7151777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 10847073 - 10847118
Alignment:
Q  112 ttttactcaactgtatggtttgttttaatttgtggtttttatttta 157  Q
    ||||||||||| | ||| |||| |||||||||||||||||||||||    
T  10847073 ttttactcaaccgcatgatttggtttaatttgtggtttttatttta 10847118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 11537230 - 11537193
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  11537230 tataaaatgatatattttttctctagttaagtttcttc 11537193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 21685234 - 21685275
Alignment:
Q  233 ttttataaaatgacata-ttttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  21685234 ttttataaaatgacatatttttttctcttgataagtttcttc 21685275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 29170441 - 29170404
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaag 329  Q
    |||||||||  |||||||||||||||||||||||||||    
T  29170441 atatataaattattatttacacttgaatagaaggcaag 29170404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 9330799 - 9330763
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagttt 269  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  9330799 ttttataaaatgatatattttttcttttgttaagttt 9330763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 12973964 - 12973928
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||| || |||||||||||||||    
T  12973964 ataaaatgacatatttttccttttgttaagtttcttc 12973928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 13056217 - 13056257
Alignment:
Q  233 ttttataaaatgacatatttt-ttctcttgttaagtttctt 272  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  13056217 ttttatagaatgacatatttttttctcttgttaagtttctt 13056257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 25559705 - 25559741
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  25559705 ataaaatgacatattttatcttttgttaagtttcttc 25559741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 18804464 - 18804503
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagcag 332  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18804464 tatataaaccattatttacacttgaatagaaggcaagcag 18804503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 18596856 - 18596818
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18596856 atatataaaccattatttacacttgaatagaaggcaagc 18596818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 500093 - 500130
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||||||||||    
T  500093 tatataaaccattatttacacttgaatagaaggcaagc 500130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 1187450 - 1187409
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaaggcaagcag 332  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  1187450 aatatataaacaattatttacacttgaatagaaggcaagcag 1187409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 9012517 - 9012557
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  9012517 ttttataaaatgacatatattttctcttgttaagtttcttc 9012557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 24124880 - 24124916
Alignment:
Q  294 atataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||||    
T  24124880 atataaaccattatttacacttgaatagaaggcaagc 24124916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 22589593 - 22589555
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  22589593 atatataaaccattatttacacttgaataaaaggcaagc 22589555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 1271530 - 1271494
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||| |||||||||||||||||||||||||||    
T  1271530 ataaaatgatatattttttctcttgttaagtttcttc 1271494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 28441870 - 28441830
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  28441870 ttttataaaatgacatattctttcttttgttaagtttcttc 28441830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 27674920 - 27674885
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtt 268  Q
    |||||||||||||||||||||||||||| |||||||    
T  27674920 ttttataaaatgacatattttttctcttcttaagtt 27674885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 38926092 - 38926131
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttcat 275  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  38926092 tataaaatgacattttttttctctcgttaagtttcttcat 38926131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 12073902 - 12073940
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttct 271  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  12073902 ttttacaaaatgacatattttttctcttgctaagtttct 12073940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 24681773 - 24681810
Alignment:
Q  237 ataaaatgacatatttt-ttctcttgttaagtttcttc 273  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  24681773 ataaaatgacatatttttttctcttgttaagtttcttc 24681810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 4785637 - 4785601
Alignment:
Q  237 ataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  4785637 ataaaatgagatattttttctcttgtaaagtttcttc 4785601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 12659954 - 12659990
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttctt 272  Q
    ||||||||||||||||||||||| | |||||||||||    
T  12659954 tataaaatgacatattttttctcgtattaagtttctt 12659990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 14549829 - 14549785
Alignment:
Q  14 ggtgttaaaaactgaatcaacccaatagaaaatctgtaaaccaaa 58  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||||||    
T  14549829 ggtgtttaaaaccgaaccaacccaatagaaaaactgtaaaccaaa 14549785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 15452348 - 15452388
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||| |||||||||||||||| ||||||||| |||||||    
T  15452348 ttttattaaatgacatattttttttcttgttaaatttcttc 15452388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 18755006 - 18755046
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||  || ||||||||||||||||||||||||    
T  18755006 ttttataaaatggaattttttttctcttgttaagtttcttc 18755046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 40436839 - 40436807
Alignment:
Q  232 tttttataaaatgacatattttttctcttgtta 264  Q
    |||||||||||||||||||||||||| ||||||    
T  40436839 tttttataaaatgacatattttttcttttgtta 40436807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 44024536 - 44024508
Alignment:
Q  244 gacatattttttctcttgttaagtttctt 272  Q
    |||||||||||||||||||||||||||||    
T  44024536 gacatattttttctcttgttaagtttctt 44024508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 102956 - 102994
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||||||||||    
T  102956 atatataaaccattatttacacttgaatagaaggcaagc 102994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 1574 - 1537
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttc 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1574 ttttataaaatgacatattttttctcttgttaagtttc 1537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 8143 - 8106
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttc 270  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8143 ttttataaaatgacatattttttctcttgttaagtttc 8106  T

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Target: scaffold0688; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 3167 - 3128
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  3167 ttttataaaatgacatattttt-ctcttgttaagtttcttc 3128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 4834 - 4795
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4834 ttttataaaatgacatattttt-ctcttgttaagtttcttc 4795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 41166556 - 41166515
Alignment:
Q  232 tttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  41166556 tttttataaaatgacatgttttttctcttgttaagtttcttc 41166515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 42122668 - 42122705
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42122668 tatataaaccattatttacacttgaatagaaggcaagc 42122705  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 1472345 - 1472381
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaa 328  Q
    |||||||||||||||||||||||||||||||||||||    
T  1472345 atatataaaccattatttacacttgaatagaaggcaa 1472381  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 36964387 - 36964347
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  36964387 ttttataaaatgacatattttttctcttgttaagttgcttc 36964347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 3208498 - 3208463
Alignment:
Q  295 tataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||||||||    
T  3208498 tataaaccattatttacacttgaatagaaggcaagc 3208463  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 17344488 - 17344526
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  17344488 atatataaatcattatttacacttgaatagaaggcaagc 17344526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 17763147 - 17763109
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttct 271  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17763147 ttttacaaaatgacatattttttctcttgttaagtttct 17763109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 18745211 - 18745173
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  18745211 atatataaaccattatttacacttgaatagaagacaagc 18745173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 2248493 - 2248530
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||| |||||||||||    
T  2248493 tatataaaccattatttacacttgaacagaaggcaagc 2248530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 2886874 - 2886833
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaaggcaagcag 332  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  2886874 aatatataaaccattatttacacttgaatagaatacaagcag 2886833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 13413202 - 13413239
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||||||||||||||| |||||    
T  13413202 tatataaaccattatttacacttgaatagaagacaagc 13413239  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 34572633 - 34572670
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||| |||||||||||||||||||||||||||||||||    
T  34572633 tatagaatgacatattttttctcttgttaagtttcttc 34572670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 41868163 - 41868126
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  41868163 tatataaaccattatttacacttgaatagaaagcaagc 41868126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 4413322 - 4413286
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaag 329  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4413322 tatataaacaattatttacacttgaatagaaggcaag 4413286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 5536699 - 5536731
Alignment:
Q  292 atatataaaccattatttacacttgaatagaag 324  Q
    |||||||||||||||||||||||||||||||||    
T  5536699 atatataaaccattatttacacttgaatagaag 5536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 15320272 - 15320312
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  15320272 ttttataaaatggcatattttttctcttgataagtttcttc 15320312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 15515404 - 15515368
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaa 328  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15515404 atatataaaccattatttacacttgagtagaaggcaa 15515368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 20143202 - 20143166
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaa 328  Q
    ||||||||||||||||||||| |||||||||||||||    
T  20143202 atatataaaccattatttacatttgaatagaaggcaa 20143166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 22014360 - 22014321
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  22014360 ttttataaaatgacatattttt-ctcttgttaagtttcttc 22014321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 31719762 - 31719798
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagttt 269  Q
    |||| ||||||||||||||||||||||||||||||||    
T  31719762 ttttgtaaaatgacatattttttctcttgttaagttt 31719798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 12041114 - 12041207
Alignment:
Q  87 atttggttgggatatattcggatca---ttttactcaactgtatggtttgttttaatttgtggtttttattttagcaaccaaaacaaaccgcaa 177  Q
    |||||||| |||| |||||||||||   ||||||||||| | || ||||| |||  |||| |||||| |||||| |||||||| ||||||||||    
T  12041114 atttggtttggatgtattcggatcacttttttactcaaccgcatagtttggtttggtttgcggttttcattttaccaaccaaaccaaaccgcaa 12041207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 13194305 - 13194263
Alignment:
Q  233 ttttataaaatgacatatttttt--ctcttgttaagtttcttc 273  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  13194305 ttttataaaatgacatattttttctctcttgttaagtttcttc 13194263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 4849674 - 4849708
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaagg 325  Q
    |||||||||| ||||||||||||||||||||||||    
T  4849674 aatatataaatcattatttacacttgaatagaagg 4849708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 34360366 - 34360400
Alignment:
Q  291 aatatataaaccattatttacacttgaatagaagg 325  Q
    ||||||||||| |||||||||||||||||||||||    
T  34360366 aatatataaactattatttacacttgaatagaagg 34360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 1536986 - 1536945
Alignment:
Q  233 ttttataaaatgacatatt-ttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  1536986 ttttataaaatgacatatttttttctcttgttaaatttcttc 1536945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 11051088 - 11051128
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    |||||| ||||||||| |||||||||| |||||||||||||    
T  11051088 ttttatgaaatgacatgttttttctctcgttaagtttcttc 11051128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 26266 - 26226
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  26266 ttttataaaatgacatattttttctattgttaagtttcttc 26226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 14925 - 14889
Alignment:
Q  233 ttttataaaatgacatattttttctcttgttaagttt 269  Q
    |||||||||| || |||||||||||||||||||||||    
T  14925 ttttataaaaagatatattttttctcttgttaagttt 14889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 33100 - 33140
Alignment:
Q  292 atatataaaccattatttacacttgaatagaaggcaagcag 332  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  33100 atatatacaccattatttacacttgaatagaaggcaagcag 33140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 6379 - 6342
Alignment:
Q  236 tataaaatgacatattttttctcttgttaagtttcttc 273  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6379 tataacatgacatattttttctcttgttaagtttcttc 6342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 5175 - 5212
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  5175 tatataaaccattatttacacttgaatagaatgcaagc 5212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 13310 - 13347
Alignment:
Q  293 tatataaaccattatttacacttgaatagaaggcaagc 330  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  13310 tatataaaccattatttacatttgaatagaaagcaagc 13347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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