View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5184-Insertion-8 (Length: 253)
Name: NF5184-Insertion-8
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5184-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 18090207 - 18089965
Alignment:
| Q |
6 |
caattttcagttgaaggcagcaagagtacacaaacaagacacaagaacacaaaggaatatccctatgaatgagtcacgtgaatggnnnnnnnntatatca |
105 |
Q |
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| T |
18090207 |
caattttcagttgaaagcagcaagagtacacaaacaagacacaagaacacaaaggaatatccctatgaatgagtcacgtgaatggaaaaaatatatatca |
18090108 |
T |
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| Q |
106 |
acatgttgaacattacttctcgtttaaggactgcattaagcatttttatgctagtttaaagctctaatagtcctaannnnnnnnnatagacgaaacgata |
205 |
Q |
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| T |
18090107 |
acatgttgaacattacttctcgtttaaggactgcattaagcatttttatgctagtttaaagctctaatagtccta-----tttttttagacgaaacgata |
18090013 |
T |
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| Q |
206 |
atagtcactaaaaactcacacatataaatgaattagttagggcttgaa |
253 |
Q |
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| T |
18090012 |
atagtcattaaaaattcacgcatataaatgaattagttagggcttgaa |
18089965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 18082511 - 18082483
Alignment:
| Q |
61 |
aatatccctatgaatgagtcacgtgaatg |
89 |
Q |
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| T |
18082511 |
aatatccctatgaatgagtcacgtgaatg |
18082483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 32105157 - 32105200
Alignment:
| Q |
191 |
atagacgaaacgataatagtcactaaaaactcacacatataaat |
234 |
Q |
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| T |
32105157 |
atagacgaaatgataatagtcattaaaaaatcacacatataaat |
32105200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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