View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5184-Insertion-9 (Length: 397)

Name: NF5184-Insertion-9
Description: NF5184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5184-Insertion-9
NF5184-Insertion-9
[»] chr7 (3 HSPs)
chr7 (8-397)||(7969690-7970080)
chr7 (7-302)||(37577030-37577316)
chr7 (53-114)||(37586681-37586742)
[»] chr1 (2 HSPs)
chr1 (12-378)||(17591323-17591686)
chr1 (12-211)||(17583416-17583615)
[»] chr5 (12 HSPs)
chr5 (9-351)||(32762913-32763248)
chr5 (8-204)||(28474772-28474968)
chr5 (9-169)||(32740003-32740163)
chr5 (10-210)||(32858163-32858366)
chr5 (8-167)||(32767812-32767971)
chr5 (12-167)||(32651840-32651995)
chr5 (14-169)||(32656093-32656248)
chr5 (51-166)||(25469530-25469645)
chr5 (12-140)||(32662009-32662137)
chr5 (139-211)||(25477501-25477573)
chr5 (18-192)||(32710111-32710294)
chr5 (243-378)||(28475014-28475146)
[»] chr2 (2 HSPs)
chr2 (8-273)||(16756898-16757170)
chr2 (8-169)||(16752393-16752554)
[»] chr4 (2 HSPs)
chr4 (10-199)||(21524464-21524656)
chr4 (242-294)||(2166603-2166655)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 7970080 - 7969690
Alignment:
Q  8 cgagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttca 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7970080 cgagtatagttatgatatatcggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagaacgtccaacagtttactttagcaactctttca 7969981  T
Q  108 tcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgctttggt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7969980 tcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacatttgcataacccccacggtatgccctatctccttttctttgctttggt 7969881  T
Q  208 tttttgtccaattgaagtcttattaatatcttgaatgttttggatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnn 307  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  7969880 tttttgtccaattgaagtcttattattatctttaatgttttgaatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccaaaaa 7969781  T
Q  308 nnggttgctagtgttctcta-tttttgtatcagttcttgaaatatttgtctcaaaatttctcttattgattttgatcatgaacttcttttg 397  Q
      |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  7969780 aaggttgctagtgttctctattttttgtatcagttcttgaaatatttgtctcaaaatttcttttattgattctgatcatgaacttcttttg 7969690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 37577030 - 37577316
Alignment:
Q  7 acgagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttc 106  Q
    |||||| | ||||||||||||||||||  ||| |   |||||||| |||||| ||||| ||||||||||  || |||| |||||||||| ||||||||||    
T  37577030 acgagtgtggttatgatatattggctagatctcaagcatgcaaaccgaaatttcagtcgtttgcgaagaatgtgcaacggtttactttatcaactctttc 37577129  T
Q  107 atcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgctttgg 206  Q
    || |||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||| |||||||||||   ||||| |||||||||||||||  |    
T  37577130 attagagttccttgtgattccatttggttcttctgaacctctcgagctagaaatttgcatatcccccatggtacctcctatatccttttctttgctt--g 37577227  T
Q  207 ttttttgtccaattgaagtcttattaatatcttgaatgttttggatttatacactagcattttatttatctcaaattcatcagttttgcaaatgcc 302  Q
    |||||| ||| ||  || |||||||| | ||||   ||||||| |||||||| |||||||    || |||||||||||||||||||| ||||||||    
T  37577228 tttttt-tcctatcaaaatcttattattttctt--ttgttttgaatttatactctagcat----ttaatctcaaattcatcagtttttcaaatgcc 37577316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 37586681 - 37586742
Alignment:
Q  53 gaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagt 114  Q
    |||||||||||| |||| |||||   |||||| |||||||||| |||||||||||| |||||    
T  37586681 gaaattacagtcgtttgtgaagaatatccaacggtttactttaacaactctttcatgagagt 37586742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 17591323 - 17591686
Alignment:
Q  12 tatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcag 111  Q
    |||| ||||||||||||||||| |||| |||  |||| |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||    
T  17591323 tataattatgatatattggctaggtctcagaattgcatactgaaattacagtcttttgcgaagaacgtccaacaagttactttagcaactctttcatcag 17591422  T
Q  112 agttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgctttggttttt 211  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||  |||||||||||| || ||||   |||||||||||||||||||||||||||||    
T  17591423 agttgcttgtgattccatttggttcttctgaacctctcaagctagatatttgcataacccgcacggtacctcctatctccttttctttgctttggttttt 17591522  T
Q  212 t-gtccaattgaagtcttattaatatcttgaatgttttggatt--tatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnn 308  Q
    |  ||||||| ||||||||||| | ||||  |||| ||| |||  ||||| |||||||||||      ||  |||| |||||||| ||||||||          
T  17591523 tcctccaattaaagtcttattattttcttttatgtattgaatttatatactctagcatttta------tcttattcttcagtttttcaaatgccaaacaa 17591616  T
Q  309 nggttgctagtgttctctatttttgtatcagttcttgaaatatttgtctcaaaatttctcttattgattt 378  Q
     || || ||||||| |||||||||| |||||||||||||||||   ||||||| ||||| ||||||||||    
T  17591617 aggctgttagtgttttctatttttggatcagttcttgaaatatcaatctcaaattttctattattgattt 17591686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 17583416 - 17583615
Alignment:
Q  12 tatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcag 111  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| | ||||| |||||||||| || |||||||||||||||||||||    
T  17583416 tatagttatgatatattggctaggtctcagatatccaaactgaaattacagtctttcgtgaagaacgtccaacaggttcctttagcaactctttcatcag 17583515  T
Q  112 agttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgctttggttttt 211  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||   ||||| ||||||||  |||||||||||||    
T  17583516 agttgcttgtgattccatttggttcttctgaacctctcaagctagatatttgcataacccccagggtacctcctatttccttttcaatgctttggttttt 17583615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 32762913 - 32763248
Alignment:
Q  9 gagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcat 108  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| ||||| ||||||||   || ||||||||||||||||||    
T  32762913 gagtatagttatgatatattggctagctctcagatatgcaaactgaaattacagtcttttgtgaagaacgtccaacgtgttgctttagcaactctttcat 32763012  T
Q  109 cagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgctttggtt 208  Q
    ||||||| |||||||||||||||  |||||| |||||||||||||||||  ||||||||||||||||||||   |||||||||||||||||||||| |||    
T  32763013 cagagtttcttgtgattccatttgcttcttccgaacctctcaagctagatatttgcataacccccatggtacctcctatctccttttctttgcttttgtt 32763112  T
Q  209 ttttgtccaattgaagtcttattaatatcttgaatgttttggatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnn 308  Q
    ||||  |||||| ||||||| ||| | |||| | ||||||| ||||||||  |||  ||||||    ||||||||||||||| || |||   |           
T  32763113 ttttccccaattaaagtcttgttattttcttta-tgttttgaatttatac--tagtgttttat----ctcaaattcatcagtgtttcaatgtcaaaacta 32763205  T
Q  309 nggttgctagtgttctctatttttgtatcagttcttgaaatat 351  Q
     ||||| ||||||| |||||||||| |||||||||||||||||    
T  32763206 aggttgttagtgttttctatttttggatcagttcttgaaatat 32763248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 28474772 - 28474968
Alignment:
Q  8 cgagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttca 107  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||| ||||| ||||||| || || |||||||||||| ||||    
T  28474772 cgagtatagttatgatatattggctaggtctcagatatgcaaactgactttacagtcttttgtgaagaacgtccaagaggttgctttagcaactccttca 28474871  T
Q  108 tcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgcttt 204  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||||||||  |||| |||||||||||||||   ||||||||||||||||||||||    
T  28474872 tcagagttgcttgtgattccatttggttcttccgaacctctcaagctagatatttgtataacccccatggtacctcctatctccttttctttgcttt 28474968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 32740003 - 32740163
Alignment:
Q  9 gagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcat 108  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||| |||||||| ||||  ||||||||| |||||||||||| ||||||||    
T  32740003 gagtatagttacgatatattggctacgtctcagatatgtaaactgaaattacactcttttgccaagaatgtccaacagattactttagcaaatctttcat 32740102  T
Q  109 cagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataac 169  Q
    || |||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||    
T  32740103 caaagttccttgtgattccatttagttcttctgaacctctcaagttagaaatttgcataac 32740163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 32858163 - 32858366
Alignment:
Q  10 agtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatc 109  Q
    ||||||||| |||||||| ||||| |||| ||||||||||| |||||||||||||||||| |||   |||||||| ||||||||||||||||||||||||    
T  32858163 agtatagttctgatatatcggctaggtctcagatatgcaaattgaaattacagtcttttgtgaaatacgtccaacggtttactttagcaactctttcatc 32858262  T
Q  110 agagttccttgtgattccatttcgttcttctga---acctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgctttgg 206  Q
    ||||| |||||||||||||||| |||||| |||   |||||  ||||||||  |||||||| |||||||||||   ||||||||||||||||| |||||     
T  32858263 agagtgccttgtgattccatttggttcttttgaaccacctcataagctagatatttgcatagcccccatggtacctcctatctccttttcttttctttgc 32858362  T
Q  207 tttt 210  Q
    ||||    
T  32858363 tttt 32858366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 32767812 - 32767971
Alignment:
Q  8 cgagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttca 107  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||| |  ||||| ||||||||||||||||||||| ||    
T  32767812 cgagtatagttatgatatattggctaggtctcagacatgcaaactgaaattacagtcttttgtgaaaaatgtccagcagtttactttagcaactcttcca 32767911  T
Q  108 tcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcata 167  Q
    |||||| |||||||||||||| || | ||||||||||| |||||||||||  ||||||||    
T  32767912 tcagagctccttgtgattccagttggctcttctgaaccactcaagctagaaatttgcata 32767971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 32651995 - 32651840
Alignment:
Q  12 tatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcag 111  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||  |||    ||||||   |||||| ||||| |||||||||||    
T  32651995 tatagttatgatatattggctaggtctgagatgtgcaaactgaaattacagtcttttggtaaggatttccaacgtgttacttcagcaaatctttcatcag 32651896  T
Q  112 agttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcata 167  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||    
T  32651895 agttccttgtgattccatttggttcttctgaacctctgaagctagaaatttgcata 32651840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 32656248 - 32656093
Alignment:
Q  14 tagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagag 113  Q
    |||||| |||||||||| || |||| |||| |||||  |||||||||||||||| |||||||  ||||||  | ||   |||||||||||||| || |||    
T  32656248 tagttacgatatattggttaggtctcagatgtgcaacttgaaattacagtctttcgcgaagaatgtccaatcggttgtattagcaactctttcgtcggag 32656149  T
Q  114 ttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataac 169  Q
    || ||||||||||||||| |||||| |||| |||||||||||||  ||||||||||    
T  32656148 ttgcttgtgattccatttggttcttttgaagctctcaagctagaaatttgcataac 32656093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 25469530 - 25469645
Alignment:
Q  51 ctgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctca 150  Q
    |||||||| ||  ||||||||||||  ||||||| | |||||||   ||||||||||||| |||||||||||||||||||| ||| |||||||||||||     
T  25469530 ctgaaatttcacacttttgcgaagaatgtccaacgggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcg 25469629  T
Q  151 agctagacrtttgcat 166  Q
    || ||||  |||||||    
T  25469630 agatagaaatttgcat 25469645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 32662137 - 32662009
Alignment:
Q  12 tatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcag 111  Q
    ||||| ||| |||||||||||| |||| |||| |||||||||||||| ||||||||||| |||   || ||||   || | || ||||||| ||| ||||    
T  32662137 tatagatattatatattggctaggtctcagatgtgcaaactgaaattgcagtcttttgcaaaggatgttcaacgtgttgcgttcgcaactccttcctcag 32662038  T
Q  112 agttccttgtgattccatttcgttcttct 140  Q
    |||||||| ||||||||||| ||||||||    
T  32662037 agttccttttgattccatttggttcttct 32662009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 25477501 - 25477573
Alignment:
Q  139 ctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctccttttctttgctttggttttt 211  Q
    |||||||||||||| ||||  ||||||||||||||||||||   ||||| ||||||||||| ||||| |||||    
T  25477501 ctgaacctctcaagatagaaatttgcataacccccatggtacctcctatatccttttctttactttgtttttt 25477573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 32710111 - 32710294
Alignment:
Q  18 tatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatcagagttcc 117  Q
    |||||||||||||| | |||| | |||||||   |||| |||||||||||| ||||||  |||||||   ||| |||||||  ||||||||||  |||||    
T  32710111 tatgatatattggccaggtctcaaatatgcagtttgaagttacagtcttttccgaagaatgtccaacgcgttagtttagcagatctttcatcaacgttcc 32710210  T
Q  118 ttgtgattcca---------tttcgttcttctgaacctctcaagctagacrtttgcataacccccatggtatgccctatctcct 192  Q
    | |||||||||         ||| |||||||||||| |||| |||||||  ||||||||||||||| ||||   ||||||||||    
T  32710211 tcgtgattccatttggtcattttggttcttctgaacttctcgagctagaaatttgcataacccccaaggtacctcctatctcct 32710294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 28475014 - 28475146
Alignment:
Q  243 tgttttggatttatacactagcattttatttatctcaaattcatcagttttgcaaatgccnnnnnnn-ggttgctagtgttctctatttttgtatcagtt 341  Q
    ||||||| ||||||||  |||||||||||    ||||||||||||||||||  |||||||        ||||| ||||||| |||||||||| || ||||    
T  28475014 tgttttgaatttatactatagcattttat----ctcaaattcatcagtttttgaaatgccaaaactaaggttgttagtgttttctatttttggattagtt 28475109  T
Q  342 cttgaaatatttgtctcaaaatttctcttattgattt 378  Q
    |||||||| |  |||||||| ||||| ||| ||||||    
T  28475110 cttgaaatgtcagtctcaaattttcttttactgattt 28475146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 16756898 - 16757170
Alignment:
Q  8 cgagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttca 107  Q
    |||||||||||||||||||| ||||| |||| ||| |||||||||||||||||| || ||||| ||||   | || ||  ||||||||||||||||||||    
T  16756898 cgagtatagttatgatatatcggctaggtctcagaaatgcaaactgaaattacactcgtttgcaaagaatttgcatcaagttactttagcaactctttca 16756997  T
Q  108 tcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcat---------aacccccatggtatgccctatctccttttctt 198  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||| |   |||||||         |||||||| ||||   ||||| ||||||||||    
T  16756998 tcagagttccttgtgattccaattggttcttctgaacctctcgagcttgtaatttgcataactcccacaacccccacggtaccacctatttccttttctt 16757097  T
Q  199 tgctttggttttttgtccaattgaagtcttattaatatcttgaatgttttggatttatacactagcattttattt 273  Q
    |||||||  ||||| ||| ||| ||||||||||| ||||||  |||||||| |||||||| |||||| |||||||    
T  16757098 tgctttg--tttttttcctattaaagtcttattattatcttttatgttttgaatttatactctagcaatttattt 16757170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 16752393 - 16752554
Alignment:
Q  8 cgagtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttca 107  Q
    |||||||||||||| |||   ||| | |||| ||| |||||||||||||||||| |||||||  | ||  ||||||||| ||||||||| ||||||||||    
T  16752393 cgagtatagttatggtatcaaggccaggtctcagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttca 16752492  T
Q  108 tcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacrtttgcataac 169  Q
     ||||||||||| ||||||||  | |||||||  ||||||||||||||||  ||||||||||    
T  16752493 ccagagttccttatgattccaaatggttcttccaaacctctcaagctagaaatttgcataac 16752554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 21524464 - 21524656
Alignment:
Q  10 agtatagttatgatatattggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagagcgtccaacagtttactttagcaactctttcatc 109  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||   | || ||| ||||||||||  |||||||||||     
T  21524464 agtatagttatgatatattggctaggtctgagatatgcaaattgaaattacagtcttttgtgaaatacttctaacggtttactttattaactctttcatg 21524563  T
Q  110 agagttccttgtgattccatttcgttcttctga---acctctcaagctagacrtttgcataacccccatggtatgccctatctccttttcttt 199  Q
    ||||| |||||||||||||||| |||||| |||   |||||  ||||||||  ||||||||||||||||||||   |||||||||||||||||    
T  21524564 agagtgccttgtgattccatttggttcttttgaaccacctcataagctagatatttgcataacccccatggtacctcctatctccttttcttt 21524656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 2166655 - 2166603
Alignment:
Q  242 atgttttggatttatacactagcattttatttatctcaaattcatcagttttg 294  Q
    |||||||| |||||||| |||||||||| ||||||||||||||| ||||||||    
T  2166655 atgttttgaatttatactctagcattttttttatctcaaattcaccagttttg 2166603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University